A few big changes

- Adding timezone to source config
- genera: update record (missed a few pieces)
- genera: delete record

api/genera.go

@@ -78,3 +78,17 @@ func serveUpdateGenus(w http.ResponseWriter, r *http.Request) error {
 
 	return writeJSON(w, genus)
 }
+
+func serveDeleteGenus(w http.ResponseWriter, r *http.Request) error {
+	id, _ := strconv.ParseInt(mux.Vars(r)["Id"], 10, 0)
+
+	deleted, err := store.Genera.Delete(id)
+	if err != nil {
+		return err
+	}
+	if deleted {
+		w.WriteHeader(http.StatusOK)
+	}
+
+	return writeJSON(w, &models.Genus{})
+}

api/genera_test.go

@@ -118,3 +118,30 @@ func TestGenus_Update(t *testing.T) {
 		t.Error("!success")
 	}
 }
+
+func TestGenus_Delete(t *testing.T) {
+	setup()
+
+	want := &models.Genus{Id: 1, GenusName: "Test Genus"}
+
+	calledDelete := false
+	store.Genera.(*models.MockGeneraService).Delete_ = func(id int64) (bool, error) {
+		if id != want.Id {
+			t.Errorf("wanted request for genus %d but got %d", want.Id, id)
+		}
+		calledDelete = true
+		return true, nil
+	}
+
+	success, err := apiClient.Genera.Delete(1)
+	if err != nil {
+		t.Fatal(err)
+	}
+
+	if !calledDelete {
+		t.Error("!calledDelete")
+	}
+	if !success {
+		t.Error("!success")
+	}
+}

api/handler.go

@@ -27,6 +27,7 @@ func Handler() *mux.Router {
 	m.Get(router.CreateGenus).Handler(handler(serveCreateGenus))
 	m.Get(router.Genera).Handler(handler(serveGenera))
 	m.Get(router.UpdateGenus).Handler(handler(serveUpdateGenus))
+	m.Get(router.DeleteGenus).Handler(handler(serveDeleteGenus))
 
 	return m
 }

datastore/datastore.go

@@ -1,6 +1,8 @@
 package datastore
 
 import (
+	"errors"
+
 	"github.com/jmoiron/modl"
 	"github.com/thermokarst/bactdb/models"
 )
@@ -12,6 +14,11 @@ type Datastore struct {
 	dbh    modl.SqlExecutor
 }
 
+var (
+	ErrNoRowsUpdated = errors.New(`no rows updated`)
+	ErrNoRowsDeleted = errors.New(`no rows deleted`)
+)
+
 // NewDatastore creates a new client for accessing the datastore (in PostgreSQL).
 // If dbh is nil, it uses the global DB handle.
 func NewDatastore(dbh modl.SqlExecutor) *Datastore {

datastore/db.go

@@ -26,7 +26,7 @@ var connectOnce sync.Once
 func Connect() {
 	connectOnce.Do(func() {
 		var err error
-		DB.Dbx, err = sqlx.Open("postgres", "sslmode=disable")
+		DB.Dbx, err = sqlx.Open("postgres", "timezone=UTC sslmode=disable")
 		if err != nil {
 			log.Fatal("Error connecting to PostgreSQL database (using PG* environment variables): ", err)
 		}

datastore/genera.go

@@ -47,12 +47,39 @@ func (s *generaStore) List(opt *models.GenusListOptions) ([]*models.Genus, error
 }
 
 func (s *generaStore) Update(id int64, genus *models.Genus) (bool, error) {
-	ret, err := s.dbh.Exec(`UPDATE genera SET genusname=$1 WHERE id=$2;`, genus.GenusName, id)
+	_, err := s.Get(id)
 	if err != nil {
 		return false, err
 	}
-	if rows, err := ret.RowsAffected(); rows == 0 {
+
+	if id != genus.Id {
+		return false, models.ErrGenusNotFound
+	}
+
+	changed, err := s.dbh.Update(genus)
+	if err != nil {
 		return false, err
 	}
+
+	if changed == 0 {
+		return false, ErrNoRowsUpdated
+	}
+
+	return true, nil
+}
+
+func (s *generaStore) Delete(id int64) (bool, error) {
+	genus, err := s.Get(id)
+	if err != nil {
+		return false, err
+	}
+
+	deleted, err := s.dbh.Delete(genus)
+	if err != nil {
+		return false, err
+	}
+	if deleted == 0 {
+		return false, ErrNoRowsDeleted
+	}
 	return true, nil
 }

datastore/genera_test.go

@@ -79,3 +79,62 @@ func TestGeneraStore_List_db(t *testing.T) {
 		t.Errorf("got genera %+v, want %+v", genera, want)
 	}
 }
+
+func TestGeneraStore_Update_db(t *testing.T) {
+	tx, _ := DB.Begin()
+	defer tx.Rollback()
+
+	// Test on a clean database
+	tx.Exec(`DELETE FROM genera;`)
+
+	d := NewDatastore(nil)
+	// Add a new record
+	genus := &models.Genus{GenusName: "Test Genus"}
+	created, err := d.Genera.Create(genus)
+	if err != nil {
+		t.Fatal(err)
+	}
+	if !created {
+		t.Error("!created")
+	}
+
+	// Tweak it
+	genus.GenusName = "Updated Genus"
+	updated, err := d.Genera.Update(genus.Id, genus)
+	if err != nil {
+		t.Fatal(err)
+	}
+
+	if !updated {
+		t.Error("!updated")
+	}
+}
+
+func TestGeneraStore_Delete_db(t *testing.T) {
+	tx, _ := DB.Begin()
+	defer tx.Rollback()
+
+	// Test on a clean database
+	tx.Exec(`DELETE FROM genera;`)
+
+	d := NewDatastore(tx)
+	// Add a new record
+	genus := &models.Genus{GenusName: "Test Genus"}
+	created, err := d.Genera.Create(genus)
+	if err != nil {
+		t.Fatal(err)
+	}
+	if !created {
+		t.Error("!created")
+	}
+
+	// Delete it
+	deleted, err := d.Genera.Delete(genus.Id)
+	if err != nil {
+		t.Fatal(err)
+	}
+
+	if !deleted {
+		t.Error("!delete")
+	}
+}

models/genera.go

@@ -31,6 +31,9 @@ type GeneraService interface {
 
 	// Update an existing genus.
 	Update(id int64, genus *Genus) (updated bool, err error)
+
+	// Delete an existing genus.
+	Delete(id int64) (deleted bool, err error)
 }
 
 var (
@@ -129,11 +132,34 @@ func (s *generaService) Update(id int64, genus *Genus) (bool, error) {
 	return resp.StatusCode == http.StatusOK, nil
 }
 
+func (s *generaService) Delete(id int64) (bool, error) {
+	strId := strconv.FormatInt(id, 10)
+
+	url, err := s.client.url(router.DeleteGenus, map[string]string{"Id": strId}, nil)
+	if err != nil {
+		return false, err
+	}
+
+	req, err := s.client.NewRequest("DELETE", url.String(), nil)
+	if err != nil {
+		return false, err
+	}
+
+	var genus *Genus
+	resp, err := s.client.Do(req, &genus)
+	if err != nil {
+		return false, err
+	}
+
+	return resp.StatusCode == http.StatusOK, nil
+}
+
 type MockGeneraService struct {
 	Get_    func(id int64) (*Genus, error)
 	List_   func(opt *GenusListOptions) ([]*Genus, error)
 	Create_ func(genus *Genus) (bool, error)
 	Update_ func(id int64, genus *Genus) (bool, error)
+	Delete_ func(id int64) (bool, error)
 }
 
 var _ GeneraService = &MockGeneraService{}
@@ -165,3 +191,10 @@ func (s *MockGeneraService) Update(id int64, genus *Genus) (bool, error) {
 	}
 	return s.Update_(id, genus)
 }
+
+func (s *MockGeneraService) Delete(id int64) (bool, error) {
+	if s.Delete_ == nil {
+		return false, nil
+	}
+	return s.Delete_(id)
+}

models/genera_test.go

@@ -136,3 +136,32 @@ func TestGeneraService_Update(t *testing.T) {
 		t.Fatal("!called")
 	}
 }
+
+func TestGeneraService_Delete(t *testing.T) {
+	setup()
+	defer teardown()
+
+	want := &Genus{Id: 1, GenusName: "Test Genus"}
+
+	var called bool
+	mux.HandleFunc(urlPath(t, router.DeleteGenus, map[string]string{"Id": "1"}), func(w http.ResponseWriter, r *http.Request) {
+		called = true
+		testMethod(t, r, "DELETE")
+
+		w.WriteHeader(http.StatusOK)
+		writeJSON(w, want)
+	})
+
+	deleted, err := client.Genera.Delete(1)
+	if err != nil {
+		t.Errorf("Genera.Delete returned error: %v", err)
+	}
+
+	if !deleted {
+		t.Error("!deleted")
+	}
+
+	if !called {
+		t.Fatal("!called")
+	}
+}

router/api.go

@@ -15,5 +15,6 @@ func API() *mux.Router {
 	m.Path("/genera").Methods("POST").Name(CreateGenus)
 	m.Path("/genera/{Id:.+}").Methods("GET").Name(Genus)
 	m.Path("/genera/{Id:.+}").Methods("PUT").Name(UpdateGenus)
+	m.Path("/genera/{Id:.+}").Methods("DELETE").Name(DeleteGenus)
 	return m
 }

router/routes.go

@@ -9,4 +9,5 @@ const (
 	CreateGenus = "genus:create"
 	Genera      = "genera"
 	UpdateGenus = "genus:update"
+	DeleteGenus = "genus:delete"
 )

test.sh

@@ -1,4 +1,4 @@
 #!/usr/bin/env bash
 
-PGTZ=UTC go test -v ./...
+go test -v ./...