Rebooting

migrations/00001_AddUsers_down.sql

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+-- bactdb
+-- Matthew R Dillon
+
+DROP TABLE users;
+

migrations/00001_AddUsers_up.sql

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+-- bactdb
+-- Matthew R Dillon
+
+CREATE TABLE users (
+    id BIGSERIAL NOT NULL,
+    username CHARACTER VARYING(100) NOT NULL,
+    password CHARACTER VARYING(100) NOT NULL,
+
+    created_at TIMESTAMP WITH TIME ZONE NOT NULL,
+    updated_at TIMESTAMP WITH TIME ZONE NOT NULL,
+    deleted_at TIMESTAMP WITH TIME ZONE NULL,
+
+    CONSTRAINT users_pkey PRIMARY KEY (id)
+);
+
+CREATE UNIQUE INDEX username_idx
+    ON users
+    USING btree
+    (username COLLATE pg_catalog."default");
+

migrations/00002_AddGenera_down.sql

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+-- bactdb
+-- Matthew R Dillon
+
+DROP TABLE genera;
+

migrations/00002_AddGenera_up.sql

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+-- bactdb
+-- Matthew R Dillon
+
+CREATE TABLE genera (
+    id BIGSERIAL NOT NULL,
+    genus_name CHARACTER VARYING(100) NOT NULL,
+
+    created_at TIMESTAMP WITH TIME ZONE NOT NULL,
+    updated_at TIMESTAMP WITH TIME ZONE NOT NULL,
+    deleted_at TIMESTAMP WITH TIME ZONE NULL,
+
+    CONSTRAINT genus_pkey PRIMARY KEY (id)
+);
+

migrations/00003_AddSpecies_down.sql

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+-- bactdb
+-- Matthew R Dillon
+
+DROP TABLE species;
+

migrations/00003_AddSpecies_up.sql

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+-- bactdb
+-- Matthew Dillon
+
+CREATE TABLE species (
+    id BIGSERIAL NOT NULL,
+    genus_id BIGINT NOT NULL,
+    species_name CHARACTER VARYING(100) NOT NULL,
+
+    created_at TIMESTAMP WITH TIME ZONE NOT NULL,
+    updated_at TIMESTAMP WITH TIME ZONE NOT NULL,
+    deleted_at TIMESTAMP WITH TIME ZONE NULL,
+
+    CONSTRAINT species_pkey PRIMARY KEY (id),
+    FOREIGN KEY (genus_id) REFERENCES genera(id)
+);
+
+CREATE INDEX genus_id_idx ON species (genus_id);
+

migrations/00004_AddStrain_down.sql

@@ -0,0 +1,5 @@
+-- bactdb
+-- Matthew R Dillon
+
+DROP TABLE strains;
+

migrations/00004_AddStrain_up.sql

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+-- bactdb
+-- Matthew R Dillon
+
+CREATE TABLE strains (
+    id BIGSERIAL NOT NULL,
+    species_id BIGINT NOT NULL,
+    strain_name CHARACTER VARYING(100) NOT NULL,
+    strain_type CHARACTER VARYING(100) NOT NULL,
+    etymology CHARACTER VARYING(500) NULL,
+    accession_banks CHARACTER VARYING(100) NULL,
+    genbank_embl_ddb CHARACTER VARYING(100) NULL,
+    isolated_from CHARACTER VARYING(100) NULL,
+
+    created_at TIMESTAMP WITH TIME ZONE NOT NULL,
+    updated_at TIMESTAMP WITH TIME ZONE NOT NULL,
+    deleted_at TIMESTAMP WITH TIME ZONE NULL,
+
+    CONSTRAINT strain_pkey PRIMARY KEY (id),
+    FOREIGN KEY (species_id) REFERENCES species(id)
+);
+
+CREATE INDEX species_id_idx ON strains (species_id);
+

migrations/00005_AddCharacteristicTypes_down.sql

@@ -0,0 +1,5 @@
+-- bactdb
+-- Matthew R Dillon
+
+DROP TABLE characteristic_types;
+

migrations/00005_AddCharacteristicTypes_up.sql

@@ -0,0 +1,14 @@
+-- bactdb
+-- Matthew R Dillon
+
+CREATE TABLE characteristic_types (
+    id BIGSERIAL NOT NULL,
+    characteristic_type_name CHARACTER VARYING(100) NOT NULL,
+
+    created_at TIMESTAMP WITH TIME ZONE NOT NULL,
+    updated_at TIMESTAMP WITH TIME ZONE NOT NULL,
+    deleted_at TIMESTAMP WITH TIME ZONE NULL,
+
+    CONSTRAINT characteristic_types_pkey PRIMARY KEY (id)
+);
+

migrations/00006_AddCharacteristics_down.sql

@@ -0,0 +1,5 @@
+-- bactdb
+-- Matthew R Dillon
+
+DROP TABLE characteristics;
+

migrations/00006_AddCharacteristics_up.sql

@@ -0,0 +1,18 @@
+-- bactdb
+-- Matthew R Dillon
+
+CREATE TABLE characteristics (
+    id BIGSERIAL NOT NULL,
+    characteristic_name CHARACTER VARYING(100) NOT NULL,
+    characteristic_type_id BIGINT NOT NULL,
+
+    created_at TIMESTAMP WITH TIME ZONE NOT NULL,
+    updated_at TIMESTAMP WITH TIME ZONE NOT NULL,
+    deleted_at TIMESTAMP WITH TIME ZONE NULL,
+
+    CONSTRAINT characteristics_pkey PRIMARY KEY (id),
+    FOREIGN KEY (characteristic_type_id) REFERENCES characteristic_types(id)
+);
+
+CREATE INDEX characteristic_type_id_idx ON characteristics (characteristic_type_id);
+

migrations/00007_AddText_Measurement_Types_down.sql

@@ -0,0 +1,5 @@
+-- bactdb
+-- Matthew R Dillon
+
+DROP TABLE text_measurement_types;
+

migrations/00007_AddText_Measurement_Types_up.sql

@@ -0,0 +1,14 @@
+-- bactdb
+-- Matthew R Dillon
+
+CREATE TABLE text_measurement_types (
+    id BIGSERIAL NOT NULL,
+    text_measurement_name CHARACTER VARYING(100) NOT NULL,
+
+    created_at TIMESTAMP WITH TIME ZONE NOT NULL,
+    updated_at TIMESTAMP WITH TIME ZONE NOT NULL,
+    deleted_at TIMESTAMP WITH TIME ZONE NULL,
+
+    CONSTRAINT text_measurements_pkey PRIMARY KEY (id)
+);
+

migrations/00008_AddUnit_Types_down.sql

@@ -0,0 +1,5 @@
+-- bactdb
+-- Matthew R Dillon
+
+DROP TABLE unit_types;
+

migrations/00008_AddUnit_Types_up.sql

@@ -0,0 +1,15 @@
+-- bactdb
+-- Matthew R Dillon
+
+CREATE TABLE unit_types (
+    id BIGSERIAL NOT NULL,
+    name CHARACTER VARYING(100) NOT NULL,
+    symbol CHARACTER VARYING(10) NOT NULL,
+
+    created_at TIMESTAMP WITH TIME ZONE NOT NULL,
+    updated_at TIMESTAMP WITH TIME ZONE NOT NULL,
+    deleted_at TIMESTAMP WITH TIME ZONE NULL,
+
+    CONSTRAINT unit_types_pkey PRIMARY KEY (id)
+);
+

migrations/00009_AddTest_Methods_down.sql

@@ -0,0 +1,5 @@
+-- bactdb
+-- Matthew R Dillon
+
+DROP TABLE test_methods;
+

migrations/00009_AddTest_Methods_up.sql

@@ -0,0 +1,14 @@
+-- bactdb
+-- Matthew R Dillon
+
+CREATE TABLE test_methods (
+    id BIGSERIAL NOT NULL,
+    name CHARACTER VARYING(100) NOT NULL,
+
+    created_at TIMESTAMP WITH TIME ZONE NOT NULL,
+    updated_at TIMESTAMP WITH TIME ZONE NOT NULL,
+    deleted_at TIMESTAMP WITH TIME ZONE NULL,
+
+    CONSTRAINT test_methods_pkey PRIMARY KEY (id)
+);
+

migrations/00010_AddMeasurements_down.sql

@@ -0,0 +1,5 @@
+-- bactdb
+-- Matthew R Dillon
+
+DROP TABLE measurements;
+

migrations/00010_AddMeasurements_up.sql

@@ -0,0 +1,52 @@
+-- bactdb
+-- Matthew R Dillon
+
+CREATE TABLE measurements (
+    id BIGSERIAL NOT NULL,
+    strain_id BIGINT NOT NULL,
+    characteristic_id BIGINT NOT NULL,
+    text_measurement_type_id BIGINT NULL,
+    txt_value CHARACTER VARYING(255) NULL,
+    num_value NUMERIC(8, 3) NULL,
+    confidence_interval NUMERIC(8, 3) NULL,
+    unit_type_id BIGINT NULL,
+    notes CHARACTER VARYING(255) NULL,
+    test_method_id BIGINT NULL,
+
+    created_at TIMESTAMP WITH TIME ZONE NOT NULL,
+    updated_at TIMESTAMP WITH TIME ZONE NOT NULL,
+
+    CONSTRAINT strainscharmeasurements_pkey PRIMARY KEY (id),
+    FOREIGN KEY (strain_id) REFERENCES strains(id),
+    FOREIGN KEY (characteristic_id) REFERENCES characteristics(id),
+    FOREIGN KEY (text_measurement_type_id) REFERENCES text_measurement_types(id),
+    FOREIGN KEY (unit_type_id) REFERENCES unit_types(id),
+    FOREIGN KEY (test_method_id) REFERENCES test_methods(id),
+    CONSTRAINT exclusive_data_type CHECK (
+        (text_measurement_type_id IS NOT NULL
+            AND txt_value IS NULL
+            AND num_value IS NULL
+            AND confidence_interval IS NULL
+            AND unit_type_id IS NULL)
+        OR
+        (text_measurement_type_id IS NULL
+            AND txt_value IS NULL
+            AND num_value IS NOT NULL)
+        OR
+        (text_measurement_type_id IS NULL
+            AND txt_value IS NOT NULL
+            AND num_value IS NULL
+            AND confidence_interval IS NULL
+            AND unit_type_id IS NULL))
+);
+
+CREATE INDEX strain_id_idx ON measurements (strain_id);
+
+CREATE INDEX characteristic_id_idx ON measurements (characteristic_id);
+
+CREATE INDEX text_measurement_type_id_idx ON measurements (text_measurement_type_id);
+
+CREATE INDEX unit_type_id_idx ON measurements (unit_type_id);
+
+CREATE INDEX test_method_id_idx ON measurements (test_method_id);
+