Create a strain.
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parent
6c118f47f7
commit
6bba9058aa
9 changed files with 146 additions and 2 deletions
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@ -36,6 +36,7 @@ func Handler() *mux.Router {
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m.Get(router.DeleteSpecies).Handler(handler(serveDeleteSpecies))
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m.Get(router.Strain).Handler(handler(serveStrain))
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m.Get(router.CreateStrain).Handler(handler(serveCreateStrain))
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return m
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}
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@ -1,10 +1,12 @@
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package api
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import (
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"encoding/json"
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"net/http"
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"strconv"
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"github.com/gorilla/mux"
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"github.com/thermokarst/bactdb/models"
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)
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func serveStrain(w http.ResponseWriter, r *http.Request) error {
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@ -20,3 +22,21 @@ func serveStrain(w http.ResponseWriter, r *http.Request) error {
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return writeJSON(w, strain)
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}
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func serveCreateStrain(w http.ResponseWriter, r *http.Request) error {
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var strain models.Strain
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err := json.NewDecoder(r.Body).Decode(&strain)
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if err != nil {
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return err
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}
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created, err := store.Strains.Create(&strain)
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if err != nil {
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return err
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}
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if created {
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w.WriteHeader(http.StatusCreated)
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}
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return writeJSON(w, strain)
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}
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@ -40,3 +40,30 @@ func TestStrain_Get(t *testing.T) {
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t.Errorf("got strain %+v but wanted strain %+v", got, want)
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}
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}
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func TestStrain_Create(t *testing.T) {
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setup()
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want := newStrain()
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calledPost := false
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store.Strains.(*models.MockStrainsService).Create_ = func(strain *models.Strain) (bool, error) {
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if !normalizeDeepEqual(want, strain) {
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t.Errorf("wanted request for strain %d but got %d", want, strain)
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}
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calledPost = true
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return true, nil
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}
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success, err := apiClient.Strains.Create(want)
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if err != nil {
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t.Fatal(err)
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}
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if !calledPost {
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t.Error("!calledPost")
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}
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if !success {
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t.Error("!success")
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}
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}
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@ -20,3 +20,10 @@ func (s *strainsStore) Get(id int64) (*models.Strain, error) {
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}
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return strain[0], nil
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}
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func (s *strainsStore) Create(strain *models.Strain) (bool, error) {
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if err := s.dbh.Insert(strain); err != nil {
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return false, err
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}
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return true, nil
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}
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@ -45,3 +45,23 @@ func TestStrainsStore_Get_db(t *testing.T) {
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t.Errorf("got strain %+v, want %+v", strain, want)
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}
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}
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func TestStrainsStore_Create_db(t *testing.T) {
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tx, _ := DB.Begin()
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defer tx.Rollback()
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strain := newStrain(t, tx)
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d := NewDatastore(tx)
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created, err := d.Strains.Create(strain)
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if err != nil {
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t.Fatal(err)
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}
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if !created {
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t.Error("!created")
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}
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if strain.Id == 0 {
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t.Error("want nonzero strain.Id after submitting")
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}
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}
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@ -2,6 +2,7 @@ package models
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import (
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"errors"
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"net/http"
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"strconv"
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"time"
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@ -30,6 +31,9 @@ func NewStrain() *Strain {
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type StrainsService interface {
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// Get a strain
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Get(id int64) (*Strain, error)
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// Create a strain record
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Create(strain *Strain) (bool, error)
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}
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var (
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@ -62,8 +66,28 @@ func (s *strainsService) Get(id int64) (*Strain, error) {
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return strain, nil
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}
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func (s *strainsService) Create(strain *Strain) (bool, error) {
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url, err := s.client.url(router.CreateStrain, nil, nil)
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if err != nil {
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return false, err
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}
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req, err := s.client.NewRequest("POST", url.String(), strain)
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if err != nil {
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return false, err
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}
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resp, err := s.client.Do(req, &strain)
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if err != nil {
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return false, err
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}
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return resp.StatusCode == http.StatusCreated, nil
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}
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type MockStrainsService struct {
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Get_ func(id int64) (*Strain, error)
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Get_ func(id int64) (*Strain, error)
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Create_ func(strain *Strain) (bool, error)
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}
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var _ StrainsService = &MockStrainsService{}
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@ -74,3 +98,10 @@ func (s *MockStrainsService) Get(id int64) (*Strain, error) {
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}
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return s.Get_(id)
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}
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func (s *MockStrainsService) Create(strain *Strain) (bool, error) {
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if s.Create_ == nil {
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return false, nil
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}
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return s.Create_(strain)
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}
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@ -44,3 +44,39 @@ func TestStrainService_Get(t *testing.T) {
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t.Errorf("Strain.Get return %+v, want %+v", strain, want)
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}
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}
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func TestStrainService_Create(t *testing.T) {
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setup()
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defer teardown()
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want := newStrain()
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var called bool
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mux.HandleFunc(urlPath(t, router.CreateStrain, nil), func(w http.ResponseWriter, r *http.Request) {
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called = true
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testMethod(t, r, "POST")
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testBody(t, r, `{"id":1,"species_id":1,"strain_name":"Test Strain","strain_type":"Test Type","etymology":"Test Etymology","accession_banks":"Test Accession","genbank_eml_ddb":"Test Genbank","created_at":"0001-01-01T00:00:00Z","updated_at":"0001-01-01T00:00:00Z","deleted_at":"0001-01-01T00:00:00Z"}`+"\n")
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w.WriteHeader(http.StatusCreated)
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writeJSON(w, want)
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})
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strain := newStrain()
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created, err := client.Strains.Create(strain)
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if err != nil {
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t.Errorf("Strains.Create returned error: %v", err)
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}
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if !created {
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t.Error("!created")
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}
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if !called {
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t.Fatal("!called")
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}
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normalizeTime(&want.CreatedAt, &want.UpdatedAt, &want.DeletedAt)
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if !reflect.DeepEqual(strain, want) {
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t.Errorf("Strains.Create returned %+v, want %+v", strain, want)
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}
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}
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@ -25,6 +25,7 @@ func API() *mux.Router {
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m.Path("/species/{Id:.+}").Methods("DELETE").Name(DeleteSpecies)
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// Strains
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m.Path("/strains").Methods("POST").Name(CreateStrain)
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m.Path("/strains/{Id:.+}").Methods("GET").Name(Strain)
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return m
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@ -17,5 +17,6 @@ const (
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UpdateSpecies = "species:update"
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DeleteSpecies = "species:delete"
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Strain = "strain:get"
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Strain = "strain:get"
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CreateStrain = "strain:create"
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)
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