Importing base schema

datastore/migrations/00004_AddStrain_down.sql

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+-- bactdb
+-- Matthew R Dillon
+
+DROP TABLE strains;
+

datastore/migrations/00004_AddStrain_up.sql

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+-- bactdb
+-- Matthew R Dillon
+
+CREATE TABLE strains (
+    id BIGSERIAL NOT NULL,
+    species_id BIGINT,
+    strain_name CHARACTER VARYING(100),
+    strain_type CHARACTER VARYING(100),
+    etymology CHARACTER VARYING(500),
+    accession_banks CHARACTER VARYING(100),
+    genbank_embl_ddb CHARACTER VARYING(100),
+
+    created_at TIMESTAMP WITH TIME ZONE,
+    updated_at TIMESTAMP WITH TIME ZONE,
+    deleted_at TIMESTAMP WITH TIME ZONE,
+
+    CONSTRAINT strain_pkey PRIMARY KEY (id),
+    FOREIGN KEY (species_id) REFERENCES species(id)
+);
+

datastore/migrations/00005_AddObservationTypes_down.sql

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+-- bactdb
+-- Matthew R Dillon
+
+DROP TABLE observation_types;
+

datastore/migrations/00005_AddObservationTypes_up.sql

@@ -0,0 +1,14 @@
+-- bactdb
+-- Matthew R Dillon
+
+CREATE TABLE observation_types (
+    id BIGSERIAL NOT NULL,
+    observation_type_name CHARACTER VARYING(100),
+
+    created_at TIMESTAMP WITH TIME ZONE,
+    updated_at TIMESTAMP WITH TIME ZONE,
+    deleted_at TIMESTAMP WITH TIME ZONE,
+
+    CONSTRAINT observation_types_pkey PRIMARY KEY (id)
+);
+

datastore/migrations/00006_AddObservations_down.sql

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+-- bactdb
+-- Matthew R Dillon
+
+DROP TABLE observations;
+

datastore/migrations/00006_AddObservations_up.sql

@@ -0,0 +1,16 @@
+-- bactdb
+-- Matthew R Dillon
+
+CREATE TABLE observations (
+    id BIGSERIAL NOT NULL,
+    observation_name CHARACTER VARYING(100),
+    observation_type_id BIGINT,
+
+    created_at TIMESTAMP WITH TIME ZONE,
+    updated_at TIMESTAMP WITH TIME ZONE,
+    deleted_at TIMESTAMP WITH TIME ZONE,
+
+    CONSTRAINT observations_pkey PRIMARY KEY (id),
+    FOREIGN KEY (observation_type_id) REFERENCES observation_types(id)
+);
+

datastore/migrations/00007_AddStrainsObservations_down.sql

@@ -0,0 +1,5 @@
+-- bactdb
+-- Matthew R Dillon
+
+DROP TABLE strainsobservations;
+

datastore/migrations/00007_AddStrainsObservations_up.sql

@@ -0,0 +1,17 @@
+-- bactdb
+-- Matthew R Dillon
+
+CREATE TABLE strainsobservations (
+    id BIGSERIAL NOT NULL,
+    strain_id BIGINT NOT NULL,
+    observations_id BIGINT NOT NULL,
+
+    created_at TIMESTAMP WITH TIME ZONE,
+    updated_at TIMESTAMP WITH TIME ZONE,
+    deleted_at TIMESTAMP WITH TIME ZONE,
+
+    CONSTRAINT strainsobservations_pkey PRIMARY KEY (id),
+    FOREIGN KEY (strain_id) REFERENCES strains(id),
+    FOREIGN KEY (observations_id) REFERENCES observations(id)
+);
+

datastore/migrations/00008_AddText_Measurements_down.sql

@@ -0,0 +1,5 @@
+-- bactdb
+-- Matthew R Dillon
+
+DROP TABLE text_measurements;
+

datastore/migrations/00008_AddText_Measurements_up.sql

@@ -0,0 +1,14 @@
+-- bactdb
+-- Matthew R Dillon
+
+CREATE TABLE text_measurements (
+    id BIGSERIAL NOT NULL,
+    text_measurement_name CHARACTER VARYING(100),
+
+    created_at TIMESTAMP WITH TIME ZONE,
+    updated_at TIMESTAMP WITH TIME ZONE,
+    deleted_at TIMESTAMP WITH TIME ZONE,
+
+    CONSTRAINT text_measurements_pkey PRIMARY KEY (id)
+);
+

datastore/migrations/00009_AddUnit_Types_down.sql

@@ -0,0 +1,5 @@
+-- bactdb
+-- Matthew R Dillon
+
+DROP TABLE unit_types;
+

datastore/migrations/00009_AddUnit_Types_up.sql

@@ -0,0 +1,15 @@
+-- bactdb
+-- Matthew R Dillon
+
+CREATE TABLE unit_types (
+    id BIGSERIAL NOT NULL,
+    name CHARACTER VARYING(100),
+    symbol CHARACTER VARYING(10),
+
+    created_at TIMESTAMP WITH TIME ZONE,
+    updated_at TIMESTAMP WITH TIME ZONE,
+    deleted_at TIMESTAMP WITH TIME ZONE,
+
+    CONSTRAINT unit_types_pkey PRIMARY KEY (id)
+);
+

datastore/migrations/00010_AddNumerical_Measurements_down.sql

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+-- bactdb
+-- Matthew R Dillon
+
+DROP TABLE numerical_measurements;
+

datastore/migrations/00010_AddNumerical_Measurements_up.sql

@@ -0,0 +1,17 @@
+-- bactdb
+-- Matthew R Dillon
+
+CREATE TABLE numerical_measurements (
+    id BIGSERIAL NOT NULL,
+    measurement_value NUMERIC(6, 4) NOT NULL,
+    confidence_interval NUMERIC(6,4) NULL,
+    unit_type_id BIGINT,
+
+    created_at TIMESTAMP WITH TIME ZONE,
+    updated_at TIMESTAMP WITH TIME ZONE,
+    deleted_at TIMESTAMP WITH TIME ZONE,
+
+    CONSTRAINT numerical_measurements_pkey PRIMARY KEY (id),
+    FOREIGN KEY (unit_type_id) REFERENCES unit_types(id)
+);
+

datastore/migrations/00011_AddStrainObsMeasurements_down.sql

@@ -0,0 +1,5 @@
+-- bactdb
+-- Matthew R Dillon
+
+DROP TABLE strainsobsmeasurements;
+

datastore/migrations/00011_AddStrainObsMeasurements_up.sql

@@ -0,0 +1,17 @@
+-- bactdb
+-- Matthew R Dillon
+
+CREATE TABLE strainsobsmeasurements (
+    id BIGSERIAL NOT NULL,
+    strainsobservations_id BIGINT,
+    measurement_table CHARACTER VARYING(15),
+    measurement_id BIGINT,
+
+    created_at TIMESTAMP WITH TIME ZONE,
+    updated_at TIMESTAMP WITH TIME ZONE,
+    deleted_at TIMESTAMP WITH TIME ZONE,
+
+    CONSTRAINT strainsobsmeasurements_pkey PRIMARY KEY (id),
+    FOREIGN KEY (strainsobservations_id) REFERENCES strainsobservations(id)
+);
+