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Explicit schema + FK indices.

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This commit is contained in:
Matthew Dillon 2014-12-03 14:59:59 -09:00
parent d092637b33
commit b15eb217ef
9 changed files with 56 additions and 46 deletions
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8
datastore/migrations/00001_AddUsers_up.sql
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@ -3,11 +3,11 @@
CREATE TABLE users ( CREATE TABLE users (
id BIGSERIAL NOT NULL, id BIGSERIAL NOT NULL,
username CHARACTER VARYING(100), username CHARACTER VARYING(100) NOT NULL,
created_at TIMESTAMP WITH TIME ZONE, created_at TIMESTAMP WITH TIME ZONE NOT NULL,
updated_at TIMESTAMP WITH TIME ZONE, updated_at TIMESTAMP WITH TIME ZONE NOT NULL,
deleted_at TIMESTAMP WITH TIME ZONE, deleted_at TIMESTAMP WITH TIME ZONE NULL,
CONSTRAINT users_pkey PRIMARY KEY (id) CONSTRAINT users_pkey PRIMARY KEY (id)
); );

13
datastore/migrations/00002_AddGenera_up.sql
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@ -3,17 +3,12 @@
CREATE TABLE genera ( CREATE TABLE genera (
id BIGSERIAL NOT NULL, id BIGSERIAL NOT NULL,
genus_name CHARACTER VARYING(100), genus_name CHARACTER VARYING(100) NOT NULL,
created_at TIMESTAMP WITH TIME ZONE, created_at TIMESTAMP WITH TIME ZONE NOT NULL,
updated_at TIMESTAMP WITH TIME ZONE, updated_at TIMESTAMP WITH TIME ZONE NOT NULL,
deleted_at TIMESTAMP WITH TIME ZONE, deleted_at TIMESTAMP WITH TIME ZONE NULL,
CONSTRAINT genus_pkey PRIMARY KEY (id) CONSTRAINT genus_pkey PRIMARY KEY (id)
); );
CREATE UNIQUE INDEX genusname_idx
ON genera
USING btree
(genus_name COLLATE pg_catalog."default");

11
datastore/migrations/00003_AddSpecies_up.sql
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@ -4,12 +4,15 @@
CREATE TABLE species ( CREATE TABLE species (
id BIGSERIAL NOT NULL, id BIGSERIAL NOT NULL,
genus_id BIGINT NOT NULL, genus_id BIGINT NOT NULL,
species_name CHARACTER VARYING(100), species_name CHARACTER VARYING(100) NOT NULL,
created_at TIMESTAMP WITH TIME ZONE, created_at TIMESTAMP WITH TIME ZONE NOT NULL,
updated_at TIMESTAMP WITH TIME ZONE, updated_at TIMESTAMP WITH TIME ZONE NOT NULL,
deleted_at TIMESTAMP WITH TIME ZONE, deleted_at TIMESTAMP WITH TIME ZONE NULL,
CONSTRAINT species_pkey PRIMARY KEY (id), CONSTRAINT species_pkey PRIMARY KEY (id),
FOREIGN KEY (genus_id) REFERENCES genera(id) FOREIGN KEY (genus_id) REFERENCES genera(id)
); );
CREATE INDEX genus_id_idx ON species (genus_id);

16
datastore/migrations/00004_AddStrain_up.sql
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@ -6,16 +6,18 @@ CREATE TABLE strains (
species_id BIGINT NOT NULL, species_id BIGINT NOT NULL,
strain_name CHARACTER VARYING(100) NOT NULL, strain_name CHARACTER VARYING(100) NOT NULL,
strain_type CHARACTER VARYING(100) NOT NULL, strain_type CHARACTER VARYING(100) NOT NULL,
etymology CHARACTER VARYING(500), etymology CHARACTER VARYING(500) NULL,
accession_banks CHARACTER VARYING(100), accession_banks CHARACTER VARYING(100) NULL,
genbank_embl_ddb CHARACTER VARYING(100), genbank_embl_ddb CHARACTER VARYING(100) NULL,
isolated_from CHARACTER VARYING(100), isolated_from CHARACTER VARYING(100) NULL,
created_at TIMESTAMP WITH TIME ZONE, created_at TIMESTAMP WITH TIME ZONE NOT NULL,
updated_at TIMESTAMP WITH TIME ZONE, updated_at TIMESTAMP WITH TIME ZONE NOT NULL,
deleted_at TIMESTAMP WITH TIME ZONE, deleted_at TIMESTAMP WITH TIME ZONE NULL,
CONSTRAINT strain_pkey PRIMARY KEY (id), CONSTRAINT strain_pkey PRIMARY KEY (id),
FOREIGN KEY (species_id) REFERENCES species(id) FOREIGN KEY (species_id) REFERENCES species(id)
); );
CREATE INDEX species_id_idx ON strains (species_id);

8
datastore/migrations/00005_AddObservationTypes_up.sql
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@ -3,11 +3,11 @@
CREATE TABLE observation_types ( CREATE TABLE observation_types (
id BIGSERIAL NOT NULL, id BIGSERIAL NOT NULL,
observation_type_name CHARACTER VARYING(100), observation_type_name CHARACTER VARYING(100) NOT NULL,
created_at TIMESTAMP WITH TIME ZONE, created_at TIMESTAMP WITH TIME ZONE NOT NULL,
updated_at TIMESTAMP WITH TIME ZONE, updated_at TIMESTAMP WITH TIME ZONE NOT NULL,
deleted_at TIMESTAMP WITH TIME ZONE, deleted_at TIMESTAMP WITH TIME ZONE NULL,
CONSTRAINT observation_types_pkey PRIMARY KEY (id) CONSTRAINT observation_types_pkey PRIMARY KEY (id)
); );

12
datastore/migrations/00006_AddObservations_up.sql
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@ -3,14 +3,16 @@
CREATE TABLE observations ( CREATE TABLE observations (
id BIGSERIAL NOT NULL, id BIGSERIAL NOT NULL,
observation_name CHARACTER VARYING(100), observation_name CHARACTER VARYING(100) NOT NULL,
observation_type_id BIGINT, observation_type_id BIGINT NOT NULL,
created_at TIMESTAMP WITH TIME ZONE, created_at TIMESTAMP WITH TIME ZONE NOT NULL,
updated_at TIMESTAMP WITH TIME ZONE, updated_at TIMESTAMP WITH TIME ZONE NOT NULL,
deleted_at TIMESTAMP WITH TIME ZONE, deleted_at TIMESTAMP WITH TIME ZONE NULL,
CONSTRAINT observations_pkey PRIMARY KEY (id), CONSTRAINT observations_pkey PRIMARY KEY (id),
FOREIGN KEY (observation_type_id) REFERENCES observation_types(id) FOREIGN KEY (observation_type_id) REFERENCES observation_types(id)
); );
CREATE INDEX observation_type_id_idx ON observations (observation_type_id);

8
datastore/migrations/00007_AddText_Measurement_Types_up.sql
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@ -3,11 +3,11 @@
CREATE TABLE text_measurement_types ( CREATE TABLE text_measurement_types (
id BIGSERIAL NOT NULL, id BIGSERIAL NOT NULL,
text_measurement_name CHARACTER VARYING(100), text_measurement_name CHARACTER VARYING(100) NOT NULL,
created_at TIMESTAMP WITH TIME ZONE, created_at TIMESTAMP WITH TIME ZONE NOT NULL,
updated_at TIMESTAMP WITH TIME ZONE, updated_at TIMESTAMP WITH TIME ZONE NOT NULL,
deleted_at TIMESTAMP WITH TIME ZONE, deleted_at TIMESTAMP WITH TIME ZONE NULL,
CONSTRAINT text_measurements_pkey PRIMARY KEY (id) CONSTRAINT text_measurements_pkey PRIMARY KEY (id)
); );

10
datastore/migrations/00008_AddUnit_Types_up.sql
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@ -3,12 +3,12 @@
CREATE TABLE unit_types ( CREATE TABLE unit_types (
id BIGSERIAL NOT NULL, id BIGSERIAL NOT NULL,
name CHARACTER VARYING(100), name CHARACTER VARYING(100) NOT NULL,
symbol CHARACTER VARYING(10), symbol CHARACTER VARYING(10) NOT NULL,
created_at TIMESTAMP WITH TIME ZONE, created_at TIMESTAMP WITH TIME ZONE NOT NULL,
updated_at TIMESTAMP WITH TIME ZONE, updated_at TIMESTAMP WITH TIME ZONE NOT NULL,
deleted_at TIMESTAMP WITH TIME ZONE, deleted_at TIMESTAMP WITH TIME ZONE NULL,
CONSTRAINT unit_types_pkey PRIMARY KEY (id) CONSTRAINT unit_types_pkey PRIMARY KEY (id)
); );

16
datastore/migrations/00009_AddMeasurements_up.sql
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@ -3,8 +3,8 @@
CREATE TABLE measurements ( CREATE TABLE measurements (
id BIGSERIAL NOT NULL, id BIGSERIAL NOT NULL,
strain_id BIGINT, strain_id BIGINT NOT NULL,
observation_id BIGINT, observation_id BIGINT NOT NULL,
text_measurement_type_id BIGINT NULL, text_measurement_type_id BIGINT NULL,
txt_value CHARACTER VARYING(255) NULL, txt_value CHARACTER VARYING(255) NULL,
num_value NUMERIC(8, 3) NULL, num_value NUMERIC(8, 3) NULL,
@ -12,8 +12,8 @@ CREATE TABLE measurements (
unit_type_id BIGINT NULL, unit_type_id BIGINT NULL,
notes CHARACTER VARYING(255) NULL, notes CHARACTER VARYING(255) NULL,
created_at TIMESTAMP WITH TIME ZONE, created_at TIMESTAMP WITH TIME ZONE NOT NULL,
updated_at TIMESTAMP WITH TIME ZONE, updated_at TIMESTAMP WITH TIME ZONE NOT NULL,
CONSTRAINT strainsobsmeasurements_pkey PRIMARY KEY (id), CONSTRAINT strainsobsmeasurements_pkey PRIMARY KEY (id),
FOREIGN KEY (strain_id) REFERENCES strains(id), FOREIGN KEY (strain_id) REFERENCES strains(id),
@ -38,3 +38,11 @@ CREATE TABLE measurements (
AND unit_type_id IS NULL)) AND unit_type_id IS NULL))
); );
CREATE INDEX strain_id_idx ON measurements (strain_id);
CREATE INDEX observation_id_idx ON measurements (observation_id);
CREATE INDEX text_measurement_type_id_idx ON measurements (text_measurement_type_id);
CREATE INDEX unit_type_id_idx ON measurements (unit_type_id);