package api import ( "encoding/json" "net/http" "net/url" "github.com/thermokarst/bactdb/errors" "github.com/thermokarst/bactdb/helpers" "github.com/thermokarst/bactdb/models" "github.com/thermokarst/bactdb/payloads" "github.com/thermokarst/bactdb/types" ) type MeasurementService struct{} func (s MeasurementService) Unmarshal(b []byte) (types.Entity, error) { var mj payloads.Measurement err := json.Unmarshal(b, &mj) return &mj, err } func (m MeasurementService) List(val *url.Values, claims *types.Claims) (types.Entity, *types.AppError) { if val == nil { return nil, NewJSONError(errors.MustProvideOptions, http.StatusInternalServerError) } var opt helpers.MeasurementListOptions if err := helpers.SchemaDecoder.Decode(&opt, *val); err != nil { return nil, NewJSONError(err, http.StatusInternalServerError) } measurements, err := models.ListMeasurements(opt, claims) if err != nil { return nil, NewJSONError(err, http.StatusInternalServerError) } char_opts, err := models.CharacteristicOptsFromMeasurements(opt) if err != nil { return nil, NewJSONError(err, http.StatusInternalServerError) } characteristics, err := models.ListCharacteristics(*char_opts, claims) if err != nil { return nil, NewJSONError(err, http.StatusInternalServerError) } strain_opts, err := models.StrainOptsFromMeasurements(opt) if err != nil { return nil, NewJSONError(err, http.StatusInternalServerError) } strains, err := models.ListStrains(*strain_opts, claims) if err != nil { return nil, NewJSONError(err, http.StatusInternalServerError) } payload := payloads.Measurements{ Characteristics: characteristics, Strains: strains, Measurements: measurements, } return &payload, nil } func (m MeasurementService) Get(id int64, genus string, claims *types.Claims) (types.Entity, *types.AppError) { measurement, err := models.GetMeasurement(id, genus, claims) if err != nil { return nil, NewJSONError(err, http.StatusInternalServerError) } payload := payloads.Measurement{ Measurement: measurement, } return &payload, nil } func (s MeasurementService) Update(id int64, e *types.Entity, genus string, claims *types.Claims) *types.AppError { payload := (*e).(*payloads.Measurement) payload.Measurement.UpdatedBy = claims.Sub payload.Measurement.Id = id if payload.Measurement.TextMeasurementType.Valid { id, err := models.GetTextMeasurementTypeId(payload.Measurement.TextMeasurementType.String) if err != nil { return NewJSONError(err, http.StatusInternalServerError) } payload.Measurement.TextMeasurementTypeId.Int64 = id payload.Measurement.TextMeasurementTypeId.Valid = true } // TODO: fix this count, err := models.DBH.Update(payload.Measurement.MeasurementBase) if err != nil { return NewJSONError(err, http.StatusInternalServerError) } if count != 1 { // TODO: fix this return NewJSONError(errors.StrainNotUpdated, http.StatusBadRequest) } measurement, err := models.GetMeasurement(id, genus, claims) if err != nil { return NewJSONError(err, http.StatusInternalServerError) } payload.Measurement = measurement return nil } func (m MeasurementService) Delete(id int64, genus string, claims *types.Claims) *types.AppError { q := `DELETE FROM measurements WHERE id=$1;` // TODO: fix this _, err := models.DBH.Exec(q, id) if err != nil { return NewJSONError(err, http.StatusInternalServerError) } return nil } func (m MeasurementService) Create(e *types.Entity, genus string, claims *types.Claims) *types.AppError { payload := (*e).(*payloads.Measurement) payload.Measurement.CreatedBy = claims.Sub payload.Measurement.UpdatedBy = claims.Sub // TODO: fix this if err := models.DBH.Insert(payload.Measurement.MeasurementBase); err != nil { return NewJSONError(err, http.StatusInternalServerError) } return nil }