package models import ( "database/sql" "errors" "fmt" "net/http" "strconv" "time" "github.com/thermokarst/bactdb/router" ) // A Strain is a subclass of species type Strain struct { Id int64 `json:"id,omitempty"` SpeciesId int64 `db:"species_id" json:"speciesId"` StrainName string `db:"strain_name" json:"strainName"` StrainType string `db:"strain_type" json:"strainType"` Etymology NullString `db:"etymology" json:"etymology"` AccessionBanks string `db:"accession_banks" json:"accessionBanks"` GenbankEmblDdb NullString `db:"genbank_embl_ddb" json:"genbankEmblDdb"` IsolatedFrom NullString `db:"isolated_from" json:"isolatedFrom"` CreatedAt time.Time `db:"created_at" json:"createdAt"` UpdatedAt time.Time `db:"updated_at" json:"updatedAt"` DeletedAt NullTime `db:"deleted_at" json:"deletedAt"` } func (s *Strain) String() string { return fmt.Sprintf("%v", *s) } func NewStrain() *Strain { return &Strain{ StrainName: "Test Strain", StrainType: "Test Type", Etymology: NullString{ sql.NullString{ String: "Test Etymology", Valid: true, }, }, AccessionBanks: "Test Accession", GenbankEmblDdb: NullString{ sql.NullString{ String: "Test Genbank", Valid: true, }, }, IsolatedFrom: NullString{ sql.NullString{ String: "", Valid: false, }, }, } } // StrainService interacts with the strain-related endpoints in bactdb's API type StrainsService interface { // Get a strain Get(id int64) (*Strain, error) // List all strains List(opt *StrainListOptions) ([]*Strain, error) // Create a strain record Create(strain *Strain) (bool, error) // Update an existing strain Update(id int64, strain *Strain) (updated bool, err error) // Delete an existing strain Delete(id int64) (deleted bool, err error) } var ( ErrStrainNotFound = errors.New("strain not found") ) type strainsService struct { client *Client } func (s *strainsService) Get(id int64) (*Strain, error) { strId := strconv.FormatInt(id, 10) url, err := s.client.url(router.Strain, map[string]string{"Id": strId}, nil) if err != nil { return nil, err } req, err := s.client.NewRequest("GET", url.String(), nil) if err != nil { return nil, err } var strain *Strain _, err = s.client.Do(req, &strain) if err != nil { return nil, err } return strain, nil } func (s *strainsService) Create(strain *Strain) (bool, error) { url, err := s.client.url(router.CreateStrain, nil, nil) if err != nil { return false, err } req, err := s.client.NewRequest("POST", url.String(), strain) if err != nil { return false, err } resp, err := s.client.Do(req, &strain) if err != nil { return false, err } return resp.StatusCode == http.StatusCreated, nil } type StrainListOptions struct { ListOptions Genus string } func (s *strainsService) List(opt *StrainListOptions) ([]*Strain, error) { url, err := s.client.url(router.Strains, nil, opt) if err != nil { return nil, err } req, err := s.client.NewRequest("GET", url.String(), nil) if err != nil { return nil, err } var strains []*Strain _, err = s.client.Do(req, &strains) if err != nil { return nil, err } return strains, nil } func (s *strainsService) Update(id int64, strain *Strain) (bool, error) { strId := strconv.FormatInt(id, 10) url, err := s.client.url(router.UpdateStrain, map[string]string{"Id": strId}, nil) if err != nil { return false, err } req, err := s.client.NewRequest("PUT", url.String(), strain) if err != nil { return false, err } resp, err := s.client.Do(req, &strain) if err != nil { return false, err } return resp.StatusCode == http.StatusOK, nil } func (s *strainsService) Delete(id int64) (bool, error) { strId := strconv.FormatInt(id, 10) url, err := s.client.url(router.DeleteStrain, map[string]string{"Id": strId}, nil) if err != nil { return false, err } req, err := s.client.NewRequest("DELETE", url.String(), nil) if err != nil { return false, err } var strain *Strain resp, err := s.client.Do(req, &strain) if err != nil { return false, err } return resp.StatusCode == http.StatusOK, nil } type MockStrainsService struct { Get_ func(id int64) (*Strain, error) List_ func(opt *StrainListOptions) ([]*Strain, error) Create_ func(strain *Strain) (bool, error) Update_ func(id int64, strain *Strain) (bool, error) Delete_ func(id int64) (bool, error) } var _ StrainsService = &MockStrainsService{} func (s *MockStrainsService) Get(id int64) (*Strain, error) { if s.Get_ == nil { return nil, nil } return s.Get_(id) } func (s *MockStrainsService) Create(strain *Strain) (bool, error) { if s.Create_ == nil { return false, nil } return s.Create_(strain) } func (s *MockStrainsService) List(opt *StrainListOptions) ([]*Strain, error) { if s.List_ == nil { return nil, nil } return s.List_(opt) } func (s *MockStrainsService) Update(id int64, strain *Strain) (bool, error) { if s.Update_ == nil { return false, nil } return s.Update_(id, strain) } func (s *MockStrainsService) Delete(id int64) (bool, error) { if s.Delete_ == nil { return false, nil } return s.Delete_(id) }