MAINT: Add new species types (#57)

Fixes #51
2018-03-03 16:33:42 -07:00 · 2018-03-03 16:33:42 -07:00 · 2e742d11f5
commit 2e742d11f5
parent 87f1f94399
1 changed files with 101 additions and 0 deletions
--- a/ccdb/species/migrations/0006_DATA_adfg_species_values.py
+++ b/ccdb/species/migrations/0006_DATA_adfg_species_values.py
@ -0,0 +1,101 @@
+from django.db import migrations
+from django.forms import modelform_factory
+
+
+class Migration(migrations.Migration):
+    def migrate(apps, schema_editor):
+        Species = apps.get_model('species', 'Species')
+        SpeciesForm = modelform_factory(Species, fields='__all__')
+
+        species = [
+            ('Alaska whitefish', 'Coregonus', 'nelsonii'),
+            ('Alaskan brook lamprey', 'Lampetra', 'alaskense'),
+            ('American river lamprey', 'Lampetra', 'ayresii'),
+            ('American shad', 'Alosa', 'sapidissima'),
+            ('Arctic char', 'Salvelinus', 'alpinus'),
+            ('Arctic cisco', 'Coregonus', 'autumnalis'),
+            ('Arctic cod', 'Boreogadus', 'saida'),
+            ('Arctic flounder', 'Pleuronectes', 'glacialis'),
+            ('Arctic grayling', 'Thymallus', 'arcticus'),
+            ('Arctic lamprey', 'Lampetra', 'camtschatica'),
+            ('Atlantic salmon', 'Salmo', 'salar'),
+            ('Bering cisco', 'Coregonus', 'laurettae'),
+            ('broad whitefish', 'Coregonus', 'nasus'),
+            ('brook trout', 'Salvelinus', 'fontinalis'),
+            ('Bull frog', 'Rana', 'catesbeiana'),
+            ('burbot', 'Lota', 'lota'),
+            ('char-unspecified', 'Salvelinus', ''),
+            ('Chinook salmon', 'Oncorhynchus', 'tshawytscha'),
+            ('chorus frog', 'Pseudacris', 'regilla'),
+            ('chum salmon', 'Oncorhynchus', 'keta'),
+            ('cod-unspecified', 'Gadidae', ''),
+            ('coho salmon', 'Oncorhynchus', 'kisutch'),
+            ('columbia spotted frog', 'Rana', 'lutieventris'),
+            ('cutthroat trout', 'Oncorhynchus', 'clarkii'),
+            ('eulachon', 'Thaleichthys', 'pacificus'),
+            ('general fish observation, no species information', '', ''),
+            ('green sturgeon', 'Acipenser', 'medirostris'),
+            ('herrings-unspecified', 'Clupeidae', ''),
+            ('humpback whitefish', 'Coregonus', 'pidschian'),
+            ('lake chub', 'Couesius', 'plumbeus'),
+            ('lake trout', 'Salvelinus', 'namaycush'),
+            ('lake whitefish', 'Coregonus', 'clupeaformis'),
+            ('lamprey-unspecified', 'Lampetra', ''),
+            ('least cisco', 'Coregonus', 'sardinella'),
+            ('Leopard Frog', 'Rana', 'pipiens'),
+            ('longfin smelt', 'Spirinchus', 'thaleichthys'),
+            ('longnose sucker', 'Catostomus', 'catostomus'),
+            ('long-toed salamander', 'Ambystoma', 'macrodactylum'),
+            ('northwestern salamander', 'Ambystoma', 'gracile'),
+            ('Pacific cod', 'Gadus', 'macrocephalus'),
+            ('Pacific herring', 'Clupea', 'pallasii'),
+            ('Pacific lamprey', 'Lampetra', 'tridentata'),
+            ('Pacific salmon-unspecified', 'Semelparous Oncorhynchus', ''),
+            ('Pacific Sandlance', 'Ammodytes', 'hexapterus'),
+            ('pink salmon', 'Oncorhynchus', 'gorbuscha'),
+            ('pond smelt', 'Hypomesus', 'olidus'),
+            ('pygmy whitefish', 'Prosopium', 'coulteri'),
+            ('rainbow smelt', 'Osmerus', 'mordax'),
+            ('rainbow trout', 'Oncorhynchus', 'mykiss'),
+            ('red-legged frog', 'Rana', 'aurora'),
+            ('righteye flounders-unspecified', 'Pleuronectidae', ''),
+            ('roughskin newt', 'Taricha', 'granulosa'),
+            ('round whitefish', 'Prosopium', 'cylindraceum'),
+            ('saffron cod', 'Eleginus', 'gracilis'),
+            ('sharpnose sculpin', 'Clinocottus', 'acuticeps'),
+            ('sheefish', 'Stenodus', 'leucichthys'),
+            ('shiner perch', 'Cymatogaster', 'aggregata'),
+            ('smelt-unspecified', 'Osmeridae', ''),
+            ('sockeye salmon', 'Oncorhynchus', 'nerka'),
+            ('starry flounder', 'Platichthys', 'stellatus'),
+            ('stickleback-unspecified', 'Gasterosteidae', ''),
+            ('sturgeon-unspecified', 'Acipenser', ''),
+            ('surf smelt', 'Hypomesus', 'pretiosus'),
+            ('trout-perch', 'Percopsis', 'omiscomaycus'),
+            ('trout-unspecified', 'Iteroparous Oncorhynchus', ''),
+            ('western brook lamprey', 'Lampetra', 'richardsoni'),
+            ('western floater mussel', 'Anodontia', 'kennerlyi'),
+            ('western pearlshell mussel', 'Margarita', 'falcata'),
+            ('western toad', 'Bufo', 'boreas'),
+            ('white sturgeon', 'Acipenser', 'transmontanus'),
+            ('whitefish-unspecified', 'Coregoninae', ''),
+            ('wood frog', 'Rana', 'sylvatica'),
+            ('yellow perch', 'Perca', 'flavescens'),
+            ('Yukon floater mussel', 'Anodontia', 'beringia'),
+        ]
+
+        for s in species:
+            form = SpeciesForm(dict(common_name=s[0], genus=s[1],
+                                    species=s[2]))
+            if form.is_valid():
+                Species.objects.create(**form.cleaned_data)
+            else:
+                print('species', form.errors.as_data())
+
+    dependencies = [
+        ('species', '0005_replace_sex_fields'),
+    ]
+
+    operations = [
+        migrations.RunPython(migrate),
+    ]