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Alive-Dead Count

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This commit is contained in:
Matthew Ryan Dillon 2016-02-01 15:22:04 -07:00
parent 75cb9a9eea
commit 7c1b12f833
5 changed files with 72 additions and 18 deletions
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24
ccdb/utils/management/commands/import_data.py
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@ -18,7 +18,8 @@ from ccdb.processing.models import ProcessType, Reagent, \
from ccdb.collections_ccdb.models import CollectionType, CollectionMethod, \
Flaw as CollectionFlaw, ADFGPermit, Collection
from ccdb.experiments.models import Flaw as ExperimentFlaw, Experiment, \
ProtocolAttachment, TreatmentType, Treatment, TreatmentReplicate
ProtocolAttachment, TreatmentType, Treatment, TreatmentReplicate, \
AliveDeadCount
class Command(BaseCommand):
@ -242,12 +243,29 @@ def _import_admin_data():
for r in c.execute('''
SELECT *, setup_date AS "setup_date [dtdt]"
FROM tbl_treatment_replicates tr
INNER JOIN tbl_lu_record_flaws f ON f.flawid=tr.flawid;
LEFT OUTER JOIN tbl_lu_record_flaws f ON f.flawid=tr.flawid;
'''):
if r[10] is not '':
if r[7]:
flaw, _ = ExperimentFlaw.objects.get_or_create(name=r[10])
else:
flaw = None
tr = TreatmentReplicate(treatment_id=r[0], id=r[1], name=r[2],
setup_date=r[13], setup_sample_size=r[5], mass_g=r[6], flaw=flaw)
tr.save()
# Alive-Dead Count
for r in c.execute('''
SELECT *,
status_date AS "status_date [dtdt]",
status_time AS "status_time [dtdt]"
FROM tbl_alive_dead_counts adc
LEFT OUTER JOIN tbl_lu_record_flaws f ON f.flawid=adc.flawid;
'''):
if r[6]:
flaw, _ = ExperimentFlaw.objects.get_or_create(name=r[9])
else:
flaw = None
adc = AliveDeadCount(treatment_replicate_id=r[0], id=r[1],
status_date=r[12], status_time=r[13], count_alive=r[4],
count_dead=r[5], flaw=flaw)
adc.save()