wrapping up initial cut at new repo manager

bin/sync_git_repos.py

@@ -43,20 +43,15 @@ def sync_workspace(workspace_fp, repos, remote_host, remote_name, callbacks,
         init_repo(repo, repo_fp, remote, remote_name, callbacks, github_peers)
 
 
-def setup_callbacks():
-    pub_fp = os.path.expanduser('~/.ssh/id_ecdsa.pub')
-    priv_fp = os.path.expanduser('~/.ssh/id_ecdsa')
-    keypair = pygit2.Keypair('git', pub_fp, priv_fp, '')
-    callbacks = pygit2.RemoteCallbacks(credentials=keypair)
-    return callbacks
-
-
 if __name__ == '__main__':
     ini_fp = sys.argv[1]
     cfg = configparser.ConfigParser()
     cfg.read(ini_fp)
 
-    callbacks = setup_callbacks()
+    pub_fp = os.path.expanduser('~/.ssh/id_ecdsa.pub')
+    priv_fp = os.path.expanduser('~/.ssh/id_ecdsa')
+    keypair = pygit2.Keypair('git', pub_fp, priv_fp, '')
+    callbacks = pygit2.RemoteCallbacks(credentials=keypair)
 
     for section in cfg.sections():
         workspace_fp = cfg[section]['workspace']
@@ -64,12 +59,14 @@ if __name__ == '__main__':
 
         repos = cfg[section]['repos'].split(',')
         repos = [r.strip() for r in repos]
+        if '' in repos:
+            repos.remove('')
         remote_host = cfg[section]['remote_host']
         remote_name = cfg[section]['remote_name']
 
         github_peers = cfg[section]['github_peers'].split(',')
-        if github_peers == ['']:
-            github_peers = []
+        if '' in github_peers:
+            github_peers.remove('')
 
         sync_workspace(workspace_fp, repos, remote_host,
                        remote_name, callbacks, github_peers)

install.conf.yaml

@@ -7,9 +7,6 @@
   - ~/projects/mds
   - ~/projects/personal
 
-- shell:
-  - python3 bin/bootstrap_git_repos.py
-
 - link:
     ~/.tmux.conf: tmux.conf
     ~/.gitconfig: git/gitconfig

repos.ini

@@ -1,67 +1,61 @@
 [personal]
-workspace=~/projects/personal2
+workspace=~/projects/personal
 remote_host=git@pingo.thermokar.st
 remote_name=pingo
 github_peers=
 repos=
-      3dmodels,
-      advent-of-code-2015,
-      advent-of-code-2016,
       akdillon,
-      akextract,
-      akindices,
       aoc2020,
+      cs685,
+      dot_ssh,
+      dotfiles,
+      elixir-class,
+      gitolite-admin,
+      gpx-web-utils,
+      pingo,
+      planner,
+      thermokar.st,
+      zettel,
+
+[mds]
+workspace=~/projects/mds
+remote_host=git@pingo.thermokar.st
+remote_name=pingo
+github_peers=
+repos=
       arctic_hibernators_schema,
       bactdb,
       bactdb_data,
       ccdb-api,
       ccdb-old,
       ccdb-web,
-      cs425_anch_tax_data_loader,
-      cs425_anch_tax_map_app,
-      cs680_aes,
-      cs680_aes_report,
-      cs685,
-      dot_ssh,
-      dotfiles,
       drf_ember_pagination,
-      elixir-class,
-      fpjs,
-      gitolite-admin,
-      gpx-web-utils,
       hibernators,
       hibernators-web,
       hymenobacterdotinfo,
-      jwt,
-      pingo,
-      planner,
-      qzv-view,
-      stem2017,
-      thermokar.st,
-      zettel
 
 [github_thermokast_personal]
-workspace=~/projects/personal2
+workspace=~/projects/personal
 remote_host=git@github.com/thermokarst
 remote_name=thermokarst
 github_peers=
 repos=
-      thermokarst
+      thermokarst,
 
 [github_thermokarst_qiime2]
-workspace=~/projects/qiime22
+workspace=~/projects/qiime2
 remote_host=git@github.com/thermokarst
 remote_name=thermokarst
 github_peers=
 repos=
+      q2-no-op,
       workflows-playground,
-      q2-no-op
 
 [github_thermokarst_forks_qiime2]
-workspace=~/projects/qiime22
+workspace=~/projects/qiime2
 remote_host=git@github.com/thermokarst-forks
 remote_name=thermokarst
-github_peers=ebolyen,gregcaporaso,ChrisKeefe,Oddant1,nbokulich,andrewsanchez
+github_peers=ebolyen,gregcaporaso,ChrisKeefe,Oddant1,nbokulich,andrewsanchez,cherman2
 repos=
       An-Introduction-To-Applied-Bioinformatics,
       Keemei,
@@ -129,4 +123,4 @@ repos=
       view.qiime2.org,
       vm-playbooks,
       workshop-playbooks,
-      workshops
+      workshops,