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maint: stuff

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This commit is contained in:
Matthew Ryan Dillon 2022-10-20 18:36:45 -07:00
parent 2690012be5
commit c7dcdf7784
3 changed files with 12 additions and 161 deletions
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3
nvim/plugins.lua
View file

@ -18,6 +18,9 @@ return require('packer').startup(function()
----------------------------------------------------------------------------- -----------------------------------------------------------------------------
use { 'habamax/vim-godot' } use { 'habamax/vim-godot' }
-----------------------------------------------------------------------------
use { 'Bakudankun/PICO-8.vim' }
----------------------------------------------------------------------------- -----------------------------------------------------------------------------
use { use {
'chriskempson/base16-vim', 'chriskempson/base16-vim',

161
qiime2.toml
View file

@ -1,161 +0,0 @@
# github-thermokarst-qiime2
[[workspace]]
path = "$HOME/projects/qiime2"
ssh_key_path = "$HOME/.ssh/id_ecdsa"
origin.base_addr = "ssh://git@github.com/thermokarst"
origin.name = "thermokarst"
repos = [
"q2-no-op",
"workflows-playground",
]
remotes = []
# github-thermokarst-forks-qiime2
[[workspace]]
path = "$HOME/projects/qiime2"
ssh_key_path = "$HOME/.ssh/id_ecdsa"
origin.base_addr = "ssh://git@github.com/qiime2"
origin.name = "qiime2"
repos = [
"Keemei",
"action-library-packaging",
"busywork",
"conda-channel-resource",
"data302",
"dev-docs",
"docs",
"environment-files",
"library",
"logos",
"package-integration",
"paper1",
"paper2",
"q2-alignment",
"q2-composition",
"q2-cutadapt",
"q2-dada2",
"q2-deblur",
"q2-demux",
"q2-diversity",
"q2-diversity-lib",
"q2-emperor",
"q2-feature-classifier",
"q2-feature-table",
"q2-fragment-insertion",
"q2-gneiss",
"q2-longitudinal",
"q2-metadata",
"q2-mystery-stew",
"q2-phylogeny",
"q2-quality-control",
"q2-quality-filter",
"q2-sample-classifier",
"q2-taxa",
"q2-types",
"q2-vsearch",
"q2cli",
"q2cwl",
"q2galaxy",
"q2lint",
"q2studio",
"q2templates",
"q2view",
"qiime2",
"qiime2.github.io",
"sphinx-ext-qiime2",
"sphinx-qiime2-theme",
"static-site-infrastructure",
"template-repo",
"view.qiime2.org",
"vm-playbooks",
"workshop-playbooks",
"workshops",
]
remotes = [
{ name = "ChrisKeefe", base_addr = "ssh://git@github.com/ChrisKeefe" },
{ name = "Keegan-Evans", base_addr = "ssh://git@github.com/Keegan-Evans" },
{ name = "Oddant1", base_addr = "ssh://git@github.com/Oddant1" },
{ name = "cherman2", base_addr = "ssh://git@github.com/cherman2" },
{ name = "ebolyen", base_addr = "ssh://git@github.com/ebolyen" },
{ name = "gregcaporaso", base_addr = "ssh://git@github.com/gregcaporaso" },
{ name = "lizgehret", base_addr = "ssh://git@github.com/lizgehret" },
{ name = "nbokulich", base_addr = "ssh://git@github.com/nbokulich" },
{ name = "thermokarst-forks", base_addr = "ssh://git@github.com/thermokarst-forks" },
]
# github-thermokarst-forks-caporaso-lab
[[workspace]]
path = "$HOME/projects/qiime2"
ssh_key_path = "$HOME/.ssh/id_ecdsa"
origin.base_addr = "ssh://git@github.com/caporaso-lab"
origin.name = "caporaso-lab"
repos = [
"caporaso-lab.github.io",
"code-of-conduct",
"genome-sampler",
"pretrained-feature-classifiers",
"q2-phylogenomics",
]
remotes = [
{ name = "ebolyen", base_addr = "ssh://git@github.com/ebolyen" },
{ name = "gregcaporaso", base_addr = "ssh://git@github.com/gregcaporaso" },
{ name = "thermokarst-forks", base_addr = "ssh://git@github.com/thermokarst-forks" },
]
# github-thermokarst-forks-biocore
[[workspace]]
path = "$HOME/projects/qiime2"
ssh_key_path = "$HOME/.ssh/id_ecdsa"
origin.base_addr = "ssh://git@github.com/biocore"
origin.name = "biocore"
repos = [
"deblur",
"emperor",
"gneiss",
"scikit-bio",
]
remotes = [
{ name = "ebolyen", base_addr = "ssh://git@github.com/ebolyen" },
{ name = "thermokarst-forks", base_addr = "ssh://git@github.com/thermokarst-forks" },
]
# github-thermokarst-forks-bokulich-lab
[[workspace]]
path = "$HOME/projects/qiime2"
ssh_key_path = "$HOME/.ssh/id_ecdsa"
origin.base_addr = "ssh://git@github.com/bokulich-lab"
origin.name = "bokulich-lab"
repos = [
"RESCRIPt",
]
remotes = [
{ name = "nbokulich", base_addr = "ssh://git@github.com/nbokulich" },
{ name = "thermokarst-forks", base_addr = "ssh://git@github.com/thermokarst-forks" },
]
# github-thermokarst-forks-conda-forge
[[workspace]]
path = "$HOME/projects/qiime2"
ssh_key_path = "$HOME/.ssh/id_ecdsa"
origin.base_addr = "ssh://git@github.com/conda-forge"
origin.name = "conda-forge"
repos = [
"biom-format-feedstock",
"ijson-feedstock",
"scikit-bio-feedstock",
]
remotes = [
{ name = "thermokarst-forks", base_addr = "ssh://git@github.com/thermokarst-forks" },
]
# github-gregcaporaso
[[workspace]]
path = "$HOME/projects/qiime2"
ssh_key_path = "$HOME/.ssh/id_ecdsa"
origin.base_addr = "ssh://git@github.com/gregcaporaso"
origin.name = "gregcaporaso"
repos = [
"caporaso-lab-secrets",
"qiime2-meta-figures",
]
remotes = []

9
zsh/zshrc
View file

@ -68,3 +68,12 @@ function back_things_up() {
function devlog() { function devlog() {
vim -c 'Goyo' '+normal Go' +startinsert ~/projects/personal/devlog/logs/$(date '+%Y-%m-%d').gmi vim -c 'Goyo' '+normal Go' +startinsert ~/projects/personal/devlog/logs/$(date '+%Y-%m-%d').gmi
} }
# NOTE: this might need a mapped network drive to work (e.g. Z:\)
function cmd() {
CMD=$1
shift;
ARGS=$@
WIN_PWD=$(wslpath -w ${PWD})
cmd.exe /c "pushd ${WIN_PWD} && ${CMD} ${ARGS}"
}