reboot: chezmoi

README.md

@@ -1,66 +1,5 @@
 # dotfiles
 
-## wslg ubuntu
-
 ```bash
-sudo apt update
+chezmoi init 
-sudo apt upgrade
-sudo apt install neovim tmux ripgrep zsh tree git build-essential libssl-dev pkg-config mpd
-sudo hostname $HOSTNAME
-chsh -s $(which zsh)
-sudo echo "[interop]\nappendWindowsPath = false\n\n[boot]\nsystemd = true" > /etc/wsl.conf
-git clone --origin pingo ssh://git@pingo.thermokar.st/dotfiles ~/.dotfiles
-git clone https://github.com/chriskempson/base16-shell.git ~/.config/base16-shell
-git clone --recursive https://github.com/sorin-ionescu/prezto.git "${ZDOTDIR:-$HOME}/.zprezto"
-cd ~/.dotfiles
-./install
-source ~/.zshrc
-base16_ashes
-curl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs | sh
-git clone ssh://git@pingo.thermokar.st/gwar ~/gwar
-cd ~/gwar
-cargo build --release
-./target/release/gwar ~/.dotfiles/$REPOS.toml
-cd ~/ && rm -rf ~/gwar
-```
-
-## manual apps
-
-- chrome
-- cisco anyconnect
-- docker desktop
-- firefox
-- garageband
-- iterm2
-- libreoffice
-- logseq
-- melodics
-- passff-host
-- postgres.app
-- renoise
-- signal
-- slack
-- steermouse
-- thunderbird
-- virtualbox
-- vscode
-- xcode
-- zoom
-
-## optional vscode extensions
-
-```bash
-$ code --install-extension AndrsDC.base16-themes
-$ code --install-extension ecmel.vscode-html-css
-$ code --install-extension formulahendry.auto-close-tag
-$ code --install-extension hollowtree.vue-snippets
-$ code --install-extension JakeBecker.elixir-ls
-$ code --install-extension karigari.chat
-$ code --install-extension lextudio.restructuredtext
-$ code --install-extension ms-python.python
-$ code --install-extension ms-vscode.Go
-$ code --install-extension ms-vsliveshare.vsliveshare
-$ code --install-extension redhat.vscode-yaml
-$ code --install-extension vscodevim.vim
-$ code --install-extension wakatime.vscode-wakatime
 ```

check_status.sh

@@ -1,21 +0,0 @@
-#!/usr/bin/env zsh
-
-local a="main" b="pingo/main"
-local base=$( git merge-base $a $b )
-local aref=$( git rev-parse  $a )
-local bref=$( git rev-parse  $b )
-
-if [[ $(git diff --stat) != '' ]]; then
-  echo 'dotfiles: dirty'
-  exit
-fi
-
-if [[ $aref == "$bref" ]]; then
-  echo ''
-elif [[ $aref == "$base" ]]; then
-  echo 'dotfiles: needs a pull'
-elif [[ $bref == "$base" ]]; then
-  echo 'dotfiles: needs a push'
-else
-  echo 'dotfiles diverged'
-fi

dotbot

@@ -1 +0,0 @@
-Subproject commit 5d83f9e797b1950199e127a8196803f5e33e0916

home/private_dot_config/helix/config.toml

@@ -0,0 +1,4 @@
+theme = "base16_terminal"
+
+[editor]
+true-color = true

install

@@ -1,15 +0,0 @@
-#!/usr/bin/env bash
-
-set -e
-
-CONFIG="install.conf.yaml"
-DOTBOT_DIR="dotbot"
-
-DOTBOT_BIN="bin/dotbot"
-BASEDIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
-
-cd "${BASEDIR}"
-git -C "${DOTBOT_DIR}" submodule sync --quiet --recursive
-git submodule update --init --recursive "${DOTBOT_DIR}"
-
-"${BASEDIR}/${DOTBOT_DIR}/${DOTBOT_BIN}" -d "${BASEDIR}" -c "${CONFIG}" "${@}"

install.conf.yaml

@@ -1,44 +0,0 @@
-- clean:
-  - '~'
-
-- create:
-  - ~/projects/mds
-  - ~/projects/personal
-  - ~/.config/mpd/playlists
-
-- link:
-    ~/.config/mpd/mpd.conf: mpd.conf
-    ~/.tmux.conf: tmux.conf
-    ~/.gitconfig: git/gitconfig
-    ~/.config/git/ignore:
-      create: true
-      path: git/gitignore_global
-    ~/.npmrc: npmrc
-    ~/.psqlrc: psqlrc
-    ~/.ripgreprc: ripgreprc
-    ~/.zpreztorc: zsh/zpreztorc
-    ~/.zlogin: zsh/zlogin
-    ~/.zlogout: zsh/zlogout
-    ~/.zprofile: zsh/zprofile
-    ~/.zshenv: zsh/zshenv
-    ~/.zshrc: zsh/zshrc
-    ~/Library/Application Support/Code/User/settings.json:
-      create: true
-      path: vscode/settings.json
-    ~/Library/Application Support/Code/User/keybindings.json:
-      create: true
-      path: vscode/keybindings.json
-    ~/Library/Application Support/Code/User/tasks.json:
-      create: true
-      path: vscode/tasks.json
-    ~/.config/nvim/init.vim:
-      create: true
-      path: nvim/init.vim
-    ~/.config/nvim/lua/plugins.lua:
-      create: true
-      path: nvim/plugins.lua
-    ~/.config/nvim/ftplugin:
-      path: nvim/ftplugin
-    ~/bin/safe-reattach-to-user-namespace:
-      create: true
-      path: safe-reattach-to-user-namespace.sh

kakrc

@@ -1,36 +0,0 @@
-# inspired by https://gist.github.com/daboross/ce6a5a9f8d14bd4974c5f43b90dfdfaa
-
-# line numbers
-add-highlighter global/ number-lines
-# TODO: do I _have_ to use rgb here?
-set-face global LineNumbers rgb:707070,default
-
-# helper popups
-set -add global autoinfo normal
-set global ui_options ncurses_assistant=off
-
-set global autowrap_fmtcmd 'fmt -w %c'
-
-# global: wrap to 100 characters (unless FT override, below)
-add-highlighter global/ wrap -width 101 -indent -word
-set global autowrap_column 101
-
-# global: 4 space indents (unless FT override, below)
-set global tabstop 4
-hook global InsertChar \t %{ exec -draft -itersel h@ } -group kakrc-replace-tabs-with-spaces
-
-#### FT overrides ####
-hook global WinSetOption filetype=rust %{
-    set buffer formatcmd 'rustfmt'
-    set buffer tabstop 4
-    set buffer indentwidth 4
-    add-highlighter buffer/ wrap -word -width 120
-    set buffer autowrap_column 120
-}
-
-hook global WinSetOption filetype=python %{
-    set buffer tabstop 4
-    set buffer indentwidth 4
-    add-highlighter buffer/ wrap -word -width 79
-    set buffer autowrap_column 79
-}

mouse.xml

@@ -1,44 +0,0 @@
-<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
-<data>
-    <vid>1390</vid>
-    <pid>254</pid>
-    <select_profile>0</select_profile>
-    <profile>
-        <profname>default</profname>
-        <lbutton>1</lbutton>
-        <rbutton>2</rbutton>
-        <tbutton>5</tbutton>
-        <button4>41</button4>
-        <button5>41</button5>
-        <tiltleft>39</tiltleft>
-        <tiltright>40</tiltright>
-        <scrolls>5</scrolls>
-        <hlotate>5</hlotate>
-        <hspeed>5</hspeed>
-        <hcount>1</hcount>
-        <button6>33</button6>
-        <button7>34</button7>
-        <button8>36</button8>
-        <lbutton_etcKey_key1>0</lbutton_etcKey_key1>
-        <lbutton_etcKey_key2>0</lbutton_etcKey_key2>
-        <rbutton_etcKey_key1>0</rbutton_etcKey_key1>
-        <rbutton_etcKey_key2>0</rbutton_etcKey_key2>
-        <tbutton_etcKey_key1>0</tbutton_etcKey_key1>
-        <tbutton_etcKey_key2>0</tbutton_etcKey_key2>
-        <button4_etcKey_key1>1</button4_etcKey_key1>
-        <button4_etcKey_key2>73</button4_etcKey_key2>
-        <button5_etcKey_key1>1</button5_etcKey_key1>
-        <button5_etcKey_key2>72</button5_etcKey_key2>
-        <tiltleft_etcKey_key1>0</tiltleft_etcKey_key1>
-        <tiltleft_etcKey_key2>0</tiltleft_etcKey_key2>
-        <tiltright_etcKey_key1>0</tiltright_etcKey_key1>
-        <tiltright_etcKey_key2>0</tiltright_etcKey_key2>
-        <button6_etcKey_key1>0</button6_etcKey_key1>
-        <button6_etcKey_key2>0</button6_etcKey_key2>
-        <button7_etcKey_key1>0</button7_etcKey_key1>
-        <button7_etcKey_key2>0</button7_etcKey_key2>
-        <button8_etcKey_key1>0</button8_etcKey_key1>
-        <button8_etcKey_key2>0</button8_etcKey_key2>
-        <dispGesture>1</dispGesture>
-    </profile>
-</data>

nvim/ftplugin/gdscript.vim

@@ -1 +0,0 @@
-setlocal shiftwidth=4

nvim/init.vim

@@ -1,26 +0,0 @@
-" Stick with vimscript file at the moment, but prefer lua for config
-
-" TODO: fix this vimscript fallback
-set backupdir=~/.vim-tmp
-set directory=~/.vim-tmp
-
-lua << EOF
-local set = vim.opt
-
-set.number = true
-set.autoindent = true
-set.colorcolumn = {80, 100, 120}
-set.cursorline = true
-set.expandtab = true
-set.backup = true
-
-set.writebackup = true
-set.list = true
-set.listchars = { trail = '~', tab = '>.' }
-set.mouse = 'a'
-set.completeopt = { 'menu', 'menuone', 'noselect' }
-set.termguicolors = true
-set.tabstop = 4
-
-require('plugins')
-EOF

nvim/plugins.lua

@@ -1,162 +0,0 @@
-local fn = vim.fn
-
-local install_path = fn.stdpath('data')..'/site/pack/packer/start/packer.nvim'
-
-if fn.empty(fn.glob(install_path)) > 0 then
-  packer_bootstrap = fn.system({
-    'git', 'clone', '--depth', '1', 'https://github.com/wbthomason/packer.nvim', install_path
-  })
-end
-
-return require('packer').startup(function()
-  -----------------------------------------------------------------------------
-  use { 'wbthomason/packer.nvim' }
-
-  -----------------------------------------------------------------------------
-  use { 'wakatime/vim-wakatime' }
-
-  -----------------------------------------------------------------------------
-  use { 'habamax/vim-godot' }
-
-  -----------------------------------------------------------------------------
-  use { 'Bakudankun/PICO-8.vim' }
-
-  -----------------------------------------------------------------------------
-  use {
-    'chriskempson/base16-vim',
-    config = function()
-      vim.cmd('source ~/.vimrc_background')
-      vim.g.base16colorspace = 256
-    end,
-  }
-
-  -----------------------------------------------------------------------------
-  use {
-    'nvim-telescope/telescope.nvim',
-    requires = {
-      { 'nvim-lua/plenary.nvim' },
-      { 'kyazdani42/nvim-web-devicons' },
-    },
-    config = function()
-      vim.api.nvim_set_keymap('n', '-',
-        ':Telescope find_files find_command=rg,--ignore,--ignore-case,--hidden,--files<CR>',
-        { noremap = true })
-    end,
-  }
-
-  -----------------------------------------------------------------------------
-  use { 'nvim-treesitter/nvim-treesitter', run = ':TSUpdate' }
-
-  -----------------------------------------------------------------------------
-  use {
-    'hrsh7th/nvim-cmp',
-    requires = {
-      { 'hrsh7th/cmp-vsnip', after = 'nvim-cmp' },
-      { 'hrsh7th/cmp-nvim-lsp', after = 'nvim-cmp' },
-      { 'hrsh7th/cmp-buffer', after = 'nvim-cmp' },
-      { 'hrsh7th/vim-vsnip', after = 'nvim-cmp' },
-    },
-    config = function()
-      local cmp = require('cmp')
-      cmp.setup({
-        snippet = {
-          expand = function(args)
-            vim.fn["vsnip#anonymous"](args.body)
-          end,
-        },
-        mapping = {
-          ['<C-d>'] = cmp.mapping.scroll_docs(-4),
-          ['<C-f>'] = cmp.mapping.scroll_docs(4),
-          ['<C-Space>'] = cmp.mapping.complete(),
-          ['<C-e>'] = cmp.mapping.close(),
-          ['<CR>'] = cmp.mapping.confirm({ select = true }),
-        },
-        sources = {
-          { name = 'nvim_lsp' },
-          { name = 'vsnip' },
-          { name = 'buffer' },
-        }
-      })
-    end,
-  }
-
-  -----------------------------------------------------------------------------
-  use {
-    'neovim/nvim-lspconfig',
-    after = 'nvim-cmp',
-    config = function()
-      lspconfig = require('lspconfig')
-
-      lspconfig.pyright.setup({
-        settings = {
-          python = {
-            venvPath = "~/.conda/envs",
-            analysis = {
-              useLibraryCodeForTypes = true,
-            }
-          }
-        }
-      })
-
-      lspconfig.rust_analyzer.setup({})
-
-      local cmp = require('cmp_nvim_lsp')
-      local gd_capabilities = cmp.update_capabilities(
-        vim.lsp.protocol.make_client_capabilities()
-      )
-      lspconfig.gdscript.setup({
-        capabilities = gd_capabilities,
-        cmd = { 'nc', '127.0.0.1', '6008' },
-      })
-
-      end,
-  }
-
-  -----------------------------------------------------------------------------
-  use { 'mhinz/vim-signify' }
-
-  -----------------------------------------------------------------------------
-  use {
-    'simrat39/rust-tools.nvim',
-    after = 'nvim-lspconfig',
-    requires = {
-      { 'neovim/nvim-lspconfig' },
-      { 'nvim-lua/popup.nvim' },
-      { 'nvim-lua/plenary.nvim' },
-    },
-    config = function()
-      require('rust-tools').setup({})
-    end,
-  }
-
-  -----------------------------------------------------------------------------
-  use {
-    'GustavoKatel/sidebar.nvim',
-    requires = { { 'GustavoKatel/todo-comments.nvim' } },
-    config = function()
-      require('sidebar-nvim').setup({
-        side = 'right',
-        sections = { 'datetime', 'git', 'diagnostics', 'todos' }
-      })
-    end,
-  }
-
-  -----------------------------------------------------------------------------
-  use {
-    'famiu/feline.nvim',
-    config = function()
-      require('feline').setup({ preset = 'noicon' })
-    end,
-  }
-
-  -----------------------------------------------------------------------------
-  use { 'SuneelFreimuth/vim-gemtext' }
-
-  -----------------------------------------------------------------------------
-  use { 'junegunn/goyo.vim' }
-
-  -----------------------------------------------------------------------------
-  if packer_bootstrap then
-    require('packer').sync()
-  end
-end)

remarkable-sync.sh

@@ -1,6 +0,0 @@
-#!/usr/bin/env bash
-
-set -e
-
-offpunk.py --sync
-rsync -r --copy-links ~/remarkable/ root@192.168.1.157:~/sync

rsync_excludes.txt

@@ -1,31 +0,0 @@
-- *.pyc
-- .DS_Store
-- .Trash/
-- .bundle/
-- .cache/
-- .cargo/
-- .cisco/
-- .conda-bld/
-- .conda/
-- .cpan/
-- .dropbox/
-- .electron/
-- .fzf/
-- .gem/
-- .local/
-- .mail/
-- .npm/
-- .nvim/plugged/
-- .rustup/
-- .vim/plugged/
-- .wine/
-- .zprezto/
-- Applications/
-- Library/
-- __pycache__
-- miniconda3/
-- node_modules
-- tmp/
-- venv
-- .vagrant.d/
-- .vscode/extensions/

vimrc

@@ -1,86 +0,0 @@
-" filetype support provides filetype-specific indenting, syntax highlighting,
-" omni-completion and other useful settings.
-filetype plugin indent on
-
-syntax on
-
-" built-in plugin, `%` to jump to condition branch
-runtime macros/matchit.vim
-
-let mapleader=" "
-
-set autoindent
-set backspace=indent,eol,start
-set hidden
-set incsearch
-set ruler
-set wildmenu
-set wildmode=full
-set number
-set list
-set listchars=tab:▸\ ,extends:>,precedes:<,trail:~
-set cursorline
-set colorcolumn=80
-set backup
-set backupdir=~/.vim-tmp,~/.tmp,~/tmp,/var/tmp,/tmp
-set backupskip=/tmp/*,/private/tmp/*
-set directory=~/.vim-tmp,~/.tmp,~/tmp,/var/tmp,/tmp
-set writebackup
-set expandtab
-set updatetime=200
-set history=250
-set hlsearch
-
-nnoremap <silent> [b :bprevious<CR>
-nnoremap <silent> ]b :bnext<CR>
-nnoremap <silent> [B :bfirst<CR>
-nnoremap <silent> ]B :blast<CR>
-
-xnoremap . :normal .<CR>
-
-call plug#begin('~/.vim/plugged')
-  Plug 'airblade/vim-gitgutter'
-  Plug 'chriskempson/base16-vim'
-  Plug 'mattn/calendar-vim'
-  Plug 'ntpeters/vim-better-whitespace'
-  Plug 'sheerun/vim-polyglot'
-  Plug 'tpope/vim-vinegar'
-  Plug 'vim-airline/vim-airline'
-  Plug 'vim-airline/vim-airline-themes'
-  Plug 'vimwiki/vimwiki'
-  Plug 'wakatime/vim-wakatime'
-call plug#end()
-
-" for Plug 'chriskempson/base16-vim'
-let base16colorspace=256
-source ~/.vimrc_background
-
-" for Plug 'ntpeters/vim-better-whitespace'
-let g:better_whitespace_enabled=1
-let g:strip_whitespace_on_save=1
-
-" for Plug 'vim-airline/vim-airline'
-set laststatus=2
-let g:airline#extensions#tabline#enabled=1
-let g:airline#extensions#tabline#fnamemod=':t'
-
-" for Plug 'vim-airline/vim-airline-themes'
-let g:airline_theme='base16'
-
-" vimwiki
-let notes_wiki = {}
-let notes_wiki.path = '/Users/matthew/projects/personal/notes'
-let notes_wiki.syntax = 'markdown'
-let notes_wiki.ext = '.md'
-
-let weeklies_wiki = {}
-let weeklies_wiki.path = '/Users/matthew/projects/personal/notes/weeklies'
-let weeklies_wiki.syntax = 'markdown'
-let weeklies_wiki.ext = '.md'
-
-let pitches_wiki = {}
-let pitches_wiki.path = '/Users/matthew/projects/personal/notes/pitches'
-let pitches_wiki.syntax = 'markdown'
-let pitches_wiki.ext = '.md'
-
-let g:vimwiki_list = [notes_wiki, weeklies_wiki, pitches_wiki]

vscode/keybindings.json

@@ -1,11 +0,0 @@
-[
-    {
-        "key": "ctrl+w k",
-        "command": "workbench.action.focusActiveEditorGroup",
-        "when": "!editorFocus"
-    },
-    {
-        "key": "cmd+m",
-        "command": "workbench.action.toggleMaximizedPanel"
-    }
-]

vscode/mds.code-workspace

@@ -1,32 +0,0 @@
-{
-    "folders": [
-        {
-            "name": "ccdb-api",
-            "path": "/Users/matthew/projects/mds/ccdb-api"
-        },
-        {
-            "name": "ccdb-web",
-            "path": "/Users/matthew/projects/mds/ccdb-web"
-        },
-        {
-            "name": "dotfiles",
-            "path": "/Users/matthew/.dotfiles"
-        },
-        {
-            "name": "fathm",
-            "path": "/Users/matthew/projects/mds/fathm"
-        },
-        {
-            "name": "hibernators",
-            "path": "/Users/matthew/projects/mds/hibernators"
-        },
-        {
-            "name": "hibernators-web",
-            "path": "/Users/matthew/projects/mds/hibernators-web"
-        },
-        {
-            "name": "tucotuco",
-            "path": "/Users/matthew/projects/mds/tucotuco"
-        }
-    ]
-}

vscode/personal.code-workspace

@@ -1,12 +0,0 @@
-{
-    "folders": [
-        {
-            "name": "dotfiles",
-            "path": "/Users/matthew/.dotfiles"
-        },
-        {
-            "name": "elixir-class",
-            "path": "/Users/matthew/projects/personal/elixir-class"
-        }
-    ]
-}

vscode/qiime2-1.code-workspace

@@ -1,252 +0,0 @@
-{
-    "folders": [
-        {
-            "name": "action-library-packaging",
-            "path": "/Users/matthew/projects/qiime2/action-library-packaging"
-        },
-        {
-            "name": "bioconda-recipes",
-            "path": "/Users/matthew/projects/qiime2/bioconda-recipes"
-        },
-        {
-            "name": "busywork",
-            "path": "/Users/matthew/projects/qiime2/busywork"
-        },
-        {
-            "name": "busywork2_action_playground",
-            "path": "/Users/matthew/projects/qiime2/busywork2_action_playground"
-        },
-        {
-            "name": "caporaso-lab-secrets",
-            "path": "/Users/matthew/projects/qiime2/caporaso-lab-secrets"
-        },
-        {
-            "name": "caporaso-lab.github.io",
-            "path": "/Users/matthew/projects/qiime2/caporaso-lab.github.io"
-        },
-        {
-            "name": "data",
-            "path": "/Users/matthew/projects/qiime2/data"
-        },
-        {
-            "name": "data302",
-            "path": "/Users/matthew/projects/qiime2/data302"
-        },
-        {
-            "name": "deblur",
-            "path": "/Users/matthew/projects/qiime2/deblur"
-        },
-        {
-            "name": "dev-docs",
-            "path": "/Users/matthew/projects/qiime2/dev-docs"
-        },
-        {
-            "name": "discourse-unhandled-tagger",
-            "path": "/Users/matthew/projects/qiime2/discourse-unhandled-tagger"
-        },
-        {
-            "name": "docs",
-            "path": "/Users/matthew/projects/qiime2/docs"
-        },
-        {
-            "name": "dotfiles",
-            "path": "/Users/matthew/.dotfiles"
-        },
-        {
-            "name": "environment-files",
-            "path": "/Users/matthew/projects/qiime2/environment-files"
-        },
-        {
-            "name": "genome-sampler",
-            "path": "/Users/matthew/projects/qiime2/genome-sampler"
-        },
-        {
-            "name": "keemei",
-            "path": "/Users/matthew/projects/qiime2/Keemei"
-        },
-        {
-            "name": "library",
-            "path": "/Users/matthew/projects/qiime2/library"
-        },
-        {
-            "name": "logos",
-            "path": "/Users/matthew/projects/qiime2/logos"
-        },
-        {
-            "name": "paper2",
-            "path": "/Users/matthew/projects/qiime2/paper2"
-        },
-        {
-            "name": "pretrained-feature-classifiers",
-            "path": "/Users/matthew/projects/qiime2/pretrained-feature-classifiers"
-        },
-        {
-            "name": "q2-alignment",
-            "path": "/Users/matthew/projects/qiime2/q2-alignment"
-        },
-        {
-            "name": "q2-composition",
-            "path": "/Users/matthew/projects/qiime2/q2-composition"
-        },
-        {
-            "name": "q2-cutadapt",
-            "path": "/Users/matthew/projects/qiime2/q2-cutadapt"
-        },
-        {
-            "name": "q2-dada2",
-            "path": "/Users/matthew/projects/qiime2/q2-dada2"
-        },
-        {
-            "name": "q2-deblur",
-            "path": "/Users/matthew/projects/qiime2/q2-deblur"
-        },
-        {
-            "name": "q2-demux",
-            "path": "/Users/matthew/projects/qiime2/q2-demux"
-        },
-        {
-            "name": "q2-diversity",
-            "path": "/Users/matthew/projects/qiime2/q2-diversity"
-        },
-        {
-            "name": "q2-diversity-lib",
-            "path": "/Users/matthew/projects/qiime2/q2-diversity-lib"
-        },
-        {
-            "name": "q2-emperor",
-            "path": "/Users/matthew/projects/qiime2/q2-emperor"
-        },
-        {
-            "name": "q2-feature-classifier",
-            "path": "/Users/matthew/projects/qiime2/q2-feature-classifier"
-        },
-        {
-            "name": "q2-feature-table",
-            "path": "/Users/matthew/projects/qiime2/q2-feature-table"
-        },
-        {
-            "name": "q2-fragment-insertion",
-            "path": "/Users/matthew/projects/qiime2/q2-fragment-insertion"
-        },
-        {
-            "name": "q2-gneiss",
-            "path": "/Users/matthew/projects/qiime2/q2-gneiss"
-        },
-        {
-            "name": "q2-longitudinal",
-            "path": "/Users/matthew/projects/qiime2/q2-longitudinal"
-        },
-        {
-            "name": "q2-metadata",
-            "path": "/Users/matthew/projects/qiime2/q2-metadata"
-        },
-        {
-            "name": "q2-mystery-stew",
-            "path": "/Users/matthew/projects/qiime2/q2-mystery-stew"
-        },
-        {
-            "name": "q2-no-op",
-            "path": "/Users/matthew/projects/qiime2/q2-no-op"
-        },
-        {
-            "name": "q2-phylogenomics",
-            "path": "/Users/matthew/projects/qiime2/q2-phylogenomics"
-        },
-        {
-            "name": "q2-phylogeny",
-            "path": "/Users/matthew/projects/qiime2/q2-phylogeny"
-        },
-        {
-            "name": "q2-quality-control",
-            "path": "/Users/matthew/projects/qiime2/q2-quality-control"
-        },
-        {
-            "name": "q2-quality-filter",
-            "path": "/Users/matthew/projects/qiime2/q2-quality-filter"
-        },
-        {
-            "name": "q2-sample-classifier",
-            "path": "/Users/matthew/projects/qiime2/q2-sample-classifier"
-        },
-        {
-            "name": "q2-shogun",
-            "path": "/Users/matthew/projects/qiime2/q2-shogun"
-        },
-        {
-            "name": "q2-taxa",
-            "path": "/Users/matthew/projects/qiime2/q2-taxa"
-        },
-        {
-            "name": "q2-types",
-            "path": "/Users/matthew/projects/qiime2/q2-types"
-        },
-        {
-            "name": "q2-vsearch",
-            "path": "/Users/matthew/projects/qiime2/q2-vsearch"
-        },
-        {
-            "name": "q2cli",
-            "path": "/Users/matthew/projects/qiime2/q2cli"
-        },
-        {
-            "name": "q2cwl",
-            "path": "/Users/matthew/projects/qiime2/q2cwl"
-        },
-        {
-            "name": "q2galaxy",
-            "path": "/Users/matthew/projects/qiime2/q2galaxy"
-        },
-        {
-            "name": "q2studio",
-            "path": "/Users/matthew/projects/qiime2/q2studio"
-        },
-        {
-            "name": "q2templates",
-            "path": "/Users/matthew/projects/qiime2/q2templates"
-        },
-        {
-            "name": "q2view",
-            "path": "/Users/matthew/projects/qiime2/q2view"
-        },
-        {
-            "name": "qiime2",
-            "path": "/Users/matthew/projects/qiime2/qiime2"
-        },
-        {
-            "name": "qiime2-meta-figures",
-            "path": "/Users/matthew/projects/qiime2/qiime2-meta-figures"
-        },
-        {
-            "name": "qiime2.github.io",
-            "path": "/Users/matthew/projects/qiime2/qiime2.github.io"
-        },
-        {
-            "name": "scikit-bio",
-            "path": "/Users/matthew/projects/qiime2/scikit-bio"
-        },
-        {
-            "name": "static-site-infrastructure",
-            "path": "/Users/matthew/projects/qiime2/static-site-infrastructure"
-        },
-        {
-            "name": "template-repo",
-            "path": "/Users/matthew/projects/qiime2/template-repo"
-        },
-        {
-            "name": "view.qiime2.org",
-            "path": "/Users/matthew/projects/qiime2/view.qiime2.org"
-        },
-        {
-            "name": "vm-playbooks",
-            "path": "/Users/matthew/projects/qiime2/vm-playbooks"
-        },
-        {
-            "name": "workshop-playbooks",
-            "path": "/Users/matthew/projects/qiime2/workshop-playbooks"
-        },
-        {
-            "name": "workshops.qiime2.org",
-            "path": "/Users/matthew/projects/qiime2/workshops.qiime2.org"
-        }
-    ]
-}

vscode/qiime2-2.code-workspace

@@ -1,252 +0,0 @@
-{
-    "folders": [
-        {
-            "name": "action-library-packaging",
-            "path": "/Users/matthew/projects/qiime2/action-library-packaging"
-        },
-        {
-            "name": "bioconda-recipes",
-            "path": "/Users/matthew/projects/qiime2/bioconda-recipes"
-        },
-        {
-            "name": "busywork",
-            "path": "/Users/matthew/projects/qiime2/busywork"
-        },
-        {
-            "name": "busywork2_action_playground",
-            "path": "/Users/matthew/projects/qiime2/busywork2_action_playground"
-        },
-        {
-            "name": "caporaso-lab-secrets",
-            "path": "/Users/matthew/projects/qiime2/caporaso-lab-secrets"
-        },
-        {
-            "name": "caporaso-lab.github.io",
-            "path": "/Users/matthew/projects/qiime2/caporaso-lab.github.io"
-        },
-        {
-            "name": "data",
-            "path": "/Users/matthew/projects/qiime2/data"
-        },
-        {
-            "name": "data302",
-            "path": "/Users/matthew/projects/qiime2/data302"
-        },
-        {
-            "name": "deblur",
-            "path": "/Users/matthew/projects/qiime2/deblur"
-        },
-        {
-            "name": "dev-docs",
-            "path": "/Users/matthew/projects/qiime2/dev-docs"
-        },
-        {
-            "name": "discourse-unhandled-tagger",
-            "path": "/Users/matthew/projects/qiime2/discourse-unhandled-tagger"
-        },
-        {
-            "name": "docs",
-            "path": "/Users/matthew/projects/qiime2/docs"
-        },
-        {
-            "name": "dotfiles",
-            "path": "/Users/matthew/.dotfiles"
-        },
-        {
-            "name": "environment-files",
-            "path": "/Users/matthew/projects/qiime2/environment-files"
-        },
-        {
-            "name": "genome-sampler",
-            "path": "/Users/matthew/projects/qiime2/genome-sampler"
-        },
-        {
-            "name": "keemei",
-            "path": "/Users/matthew/projects/qiime2/Keemei"
-        },
-        {
-            "name": "library",
-            "path": "/Users/matthew/projects/qiime2/library"
-        },
-        {
-            "name": "logos",
-            "path": "/Users/matthew/projects/qiime2/logos"
-        },
-        {
-            "name": "paper2",
-            "path": "/Users/matthew/projects/qiime2/paper2"
-        },
-        {
-            "name": "pretrained-feature-classifiers",
-            "path": "/Users/matthew/projects/qiime2/pretrained-feature-classifiers"
-        },
-        {
-            "name": "q2-alignment",
-            "path": "/Users/matthew/projects/qiime2/q2-alignment"
-        },
-        {
-            "name": "q2-composition",
-            "path": "/Users/matthew/projects/qiime2/q2-composition"
-        },
-        {
-            "name": "q2-cutadapt",
-            "path": "/Users/matthew/projects/qiime2/q2-cutadapt"
-        },
-        {
-            "name": "q2-dada2",
-            "path": "/Users/matthew/projects/qiime2/q2-dada2"
-        },
-        {
-            "name": "q2-deblur",
-            "path": "/Users/matthew/projects/qiime2/q2-deblur"
-        },
-        {
-            "name": "q2-demux",
-            "path": "/Users/matthew/projects/qiime2/q2-demux"
-        },
-        {
-            "name": "q2-diversity",
-            "path": "/Users/matthew/projects/qiime2/q2-diversity"
-        },
-        {
-            "name": "q2-diversity-lib",
-            "path": "/Users/matthew/projects/qiime2/q2-diversity-lib"
-        },
-        {
-            "name": "q2-emperor",
-            "path": "/Users/matthew/projects/qiime2/q2-emperor"
-        },
-        {
-            "name": "q2-feature-classifier",
-            "path": "/Users/matthew/projects/qiime2/q2-feature-classifier"
-        },
-        {
-            "name": "q2-feature-table",
-            "path": "/Users/matthew/projects/qiime2/q2-feature-table"
-        },
-        {
-            "name": "q2-fragment-insertion",
-            "path": "/Users/matthew/projects/qiime2/q2-fragment-insertion"
-        },
-        {
-            "name": "q2-gneiss",
-            "path": "/Users/matthew/projects/qiime2/q2-gneiss"
-        },
-        {
-            "name": "q2-longitudinal",
-            "path": "/Users/matthew/projects/qiime2/q2-longitudinal"
-        },
-        {
-            "name": "q2-metadata",
-            "path": "/Users/matthew/projects/qiime2/q2-metadata"
-        },
-        {
-            "name": "q2-mystery-stew",
-            "path": "/Users/matthew/projects/qiime2/q2-mystery-stew"
-        },
-        {
-            "name": "q2-no-op",
-            "path": "/Users/matthew/projects/qiime2/q2-no-op"
-        },
-        {
-            "name": "q2-phylogenomics",
-            "path": "/Users/matthew/projects/qiime2/q2-phylogenomics"
-        },
-        {
-            "name": "q2-phylogeny",
-            "path": "/Users/matthew/projects/qiime2/q2-phylogeny"
-        },
-        {
-            "name": "q2-quality-control",
-            "path": "/Users/matthew/projects/qiime2/q2-quality-control"
-        },
-        {
-            "name": "q2-quality-filter",
-            "path": "/Users/matthew/projects/qiime2/q2-quality-filter"
-        },
-        {
-            "name": "q2-sample-classifier",
-            "path": "/Users/matthew/projects/qiime2/q2-sample-classifier"
-        },
-        {
-            "name": "q2-shogun",
-            "path": "/Users/matthew/projects/qiime2/q2-shogun"
-        },
-        {
-            "name": "q2-taxa",
-            "path": "/Users/matthew/projects/qiime2/q2-taxa"
-        },
-        {
-            "name": "q2-types",
-            "path": "/Users/matthew/projects/qiime2/q2-types"
-        },
-        {
-            "name": "q2-vsearch",
-            "path": "/Users/matthew/projects/qiime2/q2-vsearch"
-        },
-        {
-            "name": "q2cli",
-            "path": "/Users/matthew/projects/qiime2/q2cli"
-        },
-        {
-            "name": "q2cwl",
-            "path": "/Users/matthew/projects/qiime2/q2cwl"
-        },
-        {
-            "name": "q2galaxy",
-            "path": "/Users/matthew/projects/qiime2/q2galaxy"
-        },
-        {
-            "name": "q2studio",
-            "path": "/Users/matthew/projects/qiime2/q2studio"
-        },
-        {
-            "name": "q2templates",
-            "path": "/Users/matthew/projects/qiime2/q2templates"
-        },
-        {
-            "name": "q2view",
-            "path": "/Users/matthew/projects/qiime2/q2view"
-        },
-        {
-            "name": "qiime2",
-            "path": "/Users/matthew/projects/qiime2/qiime2"
-        },
-        {
-            "name": "qiime2-meta-figures",
-            "path": "/Users/matthew/projects/qiime2/qiime2-meta-figures"
-        },
-        {
-            "name": "qiime2.github.io",
-            "path": "/Users/matthew/projects/qiime2/qiime2.github.io"
-        },
-        {
-            "name": "scikit-bio",
-            "path": "/Users/matthew/projects/qiime2/scikit-bio"
-        },
-        {
-            "name": "static-site-infrastructure",
-            "path": "/Users/matthew/projects/qiime2/static-site-infrastructure"
-        },
-        {
-            "name": "template-repo",
-            "path": "/Users/matthew/projects/qiime2/template-repo"
-        },
-        {
-            "name": "view.qiime2.org",
-            "path": "/Users/matthew/projects/qiime2/view.qiime2.org"
-        },
-        {
-            "name": "vm-playbooks",
-            "path": "/Users/matthew/projects/qiime2/vm-playbooks"
-        },
-        {
-            "name": "workshop-playbooks",
-            "path": "/Users/matthew/projects/qiime2/workshop-playbooks"
-        },
-        {
-            "name": "workshops.qiime2.org",
-            "path": "/Users/matthew/projects/qiime2/workshops.qiime2.org"
-        }
-    ]
-}

vscode/qiime2-3.code-workspace

@@ -1,252 +0,0 @@
-{
-    "folders": [
-        {
-            "name": "action-library-packaging",
-            "path": "/Users/matthew/projects/qiime2/action-library-packaging"
-        },
-        {
-            "name": "bioconda-recipes",
-            "path": "/Users/matthew/projects/qiime2/bioconda-recipes"
-        },
-        {
-            "name": "busywork",
-            "path": "/Users/matthew/projects/qiime2/busywork"
-        },
-        {
-            "name": "busywork2_action_playground",
-            "path": "/Users/matthew/projects/qiime2/busywork2_action_playground"
-        },
-        {
-            "name": "caporaso-lab-secrets",
-            "path": "/Users/matthew/projects/qiime2/caporaso-lab-secrets"
-        },
-        {
-            "name": "caporaso-lab.github.io",
-            "path": "/Users/matthew/projects/qiime2/caporaso-lab.github.io"
-        },
-        {
-            "name": "data",
-            "path": "/Users/matthew/projects/qiime2/data"
-        },
-        {
-            "name": "data302",
-            "path": "/Users/matthew/projects/qiime2/data302"
-        },
-        {
-            "name": "deblur",
-            "path": "/Users/matthew/projects/qiime2/deblur"
-        },
-        {
-            "name": "dev-docs",
-            "path": "/Users/matthew/projects/qiime2/dev-docs"
-        },
-        {
-            "name": "discourse-unhandled-tagger",
-            "path": "/Users/matthew/projects/qiime2/discourse-unhandled-tagger"
-        },
-        {
-            "name": "docs",
-            "path": "/Users/matthew/projects/qiime2/docs"
-        },
-        {
-            "name": "dotfiles",
-            "path": "/Users/matthew/.dotfiles"
-        },
-        {
-            "name": "environment-files",
-            "path": "/Users/matthew/projects/qiime2/environment-files"
-        },
-        {
-            "name": "genome-sampler",
-            "path": "/Users/matthew/projects/qiime2/genome-sampler"
-        },
-        {
-            "name": "keemei",
-            "path": "/Users/matthew/projects/qiime2/Keemei"
-        },
-        {
-            "name": "library",
-            "path": "/Users/matthew/projects/qiime2/library"
-        },
-        {
-            "name": "logos",
-            "path": "/Users/matthew/projects/qiime2/logos"
-        },
-        {
-            "name": "paper2",
-            "path": "/Users/matthew/projects/qiime2/paper2"
-        },
-        {
-            "name": "pretrained-feature-classifiers",
-            "path": "/Users/matthew/projects/qiime2/pretrained-feature-classifiers"
-        },
-        {
-            "name": "q2-alignment",
-            "path": "/Users/matthew/projects/qiime2/q2-alignment"
-        },
-        {
-            "name": "q2-composition",
-            "path": "/Users/matthew/projects/qiime2/q2-composition"
-        },
-        {
-            "name": "q2-cutadapt",
-            "path": "/Users/matthew/projects/qiime2/q2-cutadapt"
-        },
-        {
-            "name": "q2-dada2",
-            "path": "/Users/matthew/projects/qiime2/q2-dada2"
-        },
-        {
-            "name": "q2-deblur",
-            "path": "/Users/matthew/projects/qiime2/q2-deblur"
-        },
-        {
-            "name": "q2-demux",
-            "path": "/Users/matthew/projects/qiime2/q2-demux"
-        },
-        {
-            "name": "q2-diversity",
-            "path": "/Users/matthew/projects/qiime2/q2-diversity"
-        },
-        {
-            "name": "q2-diversity-lib",
-            "path": "/Users/matthew/projects/qiime2/q2-diversity-lib"
-        },
-        {
-            "name": "q2-emperor",
-            "path": "/Users/matthew/projects/qiime2/q2-emperor"
-        },
-        {
-            "name": "q2-feature-classifier",
-            "path": "/Users/matthew/projects/qiime2/q2-feature-classifier"
-        },
-        {
-            "name": "q2-feature-table",
-            "path": "/Users/matthew/projects/qiime2/q2-feature-table"
-        },
-        {
-            "name": "q2-fragment-insertion",
-            "path": "/Users/matthew/projects/qiime2/q2-fragment-insertion"
-        },
-        {
-            "name": "q2-gneiss",
-            "path": "/Users/matthew/projects/qiime2/q2-gneiss"
-        },
-        {
-            "name": "q2-longitudinal",
-            "path": "/Users/matthew/projects/qiime2/q2-longitudinal"
-        },
-        {
-            "name": "q2-metadata",
-            "path": "/Users/matthew/projects/qiime2/q2-metadata"
-        },
-        {
-            "name": "q2-mystery-stew",
-            "path": "/Users/matthew/projects/qiime2/q2-mystery-stew"
-        },
-        {
-            "name": "q2-no-op",
-            "path": "/Users/matthew/projects/qiime2/q2-no-op"
-        },
-        {
-            "name": "q2-phylogenomics",
-            "path": "/Users/matthew/projects/qiime2/q2-phylogenomics"
-        },
-        {
-            "name": "q2-phylogeny",
-            "path": "/Users/matthew/projects/qiime2/q2-phylogeny"
-        },
-        {
-            "name": "q2-quality-control",
-            "path": "/Users/matthew/projects/qiime2/q2-quality-control"
-        },
-        {
-            "name": "q2-quality-filter",
-            "path": "/Users/matthew/projects/qiime2/q2-quality-filter"
-        },
-        {
-            "name": "q2-sample-classifier",
-            "path": "/Users/matthew/projects/qiime2/q2-sample-classifier"
-        },
-        {
-            "name": "q2-shogun",
-            "path": "/Users/matthew/projects/qiime2/q2-shogun"
-        },
-        {
-            "name": "q2-taxa",
-            "path": "/Users/matthew/projects/qiime2/q2-taxa"
-        },
-        {
-            "name": "q2-types",
-            "path": "/Users/matthew/projects/qiime2/q2-types"
-        },
-        {
-            "name": "q2-vsearch",
-            "path": "/Users/matthew/projects/qiime2/q2-vsearch"
-        },
-        {
-            "name": "q2cli",
-            "path": "/Users/matthew/projects/qiime2/q2cli"
-        },
-        {
-            "name": "q2cwl",
-            "path": "/Users/matthew/projects/qiime2/q2cwl"
-        },
-        {
-            "name": "q2galaxy",
-            "path": "/Users/matthew/projects/qiime2/q2galaxy"
-        },
-        {
-            "name": "q2studio",
-            "path": "/Users/matthew/projects/qiime2/q2studio"
-        },
-        {
-            "name": "q2templates",
-            "path": "/Users/matthew/projects/qiime2/q2templates"
-        },
-        {
-            "name": "q2view",
-            "path": "/Users/matthew/projects/qiime2/q2view"
-        },
-        {
-            "name": "qiime2",
-            "path": "/Users/matthew/projects/qiime2/qiime2"
-        },
-        {
-            "name": "qiime2-meta-figures",
-            "path": "/Users/matthew/projects/qiime2/qiime2-meta-figures"
-        },
-        {
-            "name": "qiime2.github.io",
-            "path": "/Users/matthew/projects/qiime2/qiime2.github.io"
-        },
-        {
-            "name": "scikit-bio",
-            "path": "/Users/matthew/projects/qiime2/scikit-bio"
-        },
-        {
-            "name": "static-site-infrastructure",
-            "path": "/Users/matthew/projects/qiime2/static-site-infrastructure"
-        },
-        {
-            "name": "template-repo",
-            "path": "/Users/matthew/projects/qiime2/template-repo"
-        },
-        {
-            "name": "view.qiime2.org",
-            "path": "/Users/matthew/projects/qiime2/view.qiime2.org"
-        },
-        {
-            "name": "vm-playbooks",
-            "path": "/Users/matthew/projects/qiime2/vm-playbooks"
-        },
-        {
-            "name": "workshop-playbooks",
-            "path": "/Users/matthew/projects/qiime2/workshop-playbooks"
-        },
-        {
-            "name": "workshops.qiime2.org",
-            "path": "/Users/matthew/projects/qiime2/workshops.qiime2.org"
-        }
-    ]
-}

vscode/settings.json

@@ -1,31 +0,0 @@
-{
-    "editor.cursorStyle": "block",
-    "editor.minimap.enabled": false,
-
-    "telemetry.enableTelemetry": false,
-    "telemetry.enableCrashReporter": false,
-
-    "workbench.colorTheme": "Base16 Dark Ashes",
-    "workbench.sideBar.location": "right",
-    "window.restoreFullscreen": false,
-
-    "python.jediEnabled": false,
-
-    "git.confirmSync": false,
-    "githubPullRequests.remotes": [
-        "origin",
-        "upstream",
-        "thermokarst",
-        "qiime2"
-    ],
-    "[elixir]": {
-       "editor.tabSize": 2,
-       "editor.formatOnSave": true
-    },
-    "python.condaPath": "/opt/miniconda3/bin/conda",
-    "python.defaultInterpreterPath": "~/.conda/envs/q2dev/bin/python",
-    "python.terminal.activateEnvInCurrentTerminal": true,
-    "python.languageServer": "Microsoft",
-    "liveshare.authenticationProvider": "GitHub",
-    "editor.inlineSuggest.enabled": true
-}

vscode/tasks.json

@@ -1,10 +0,0 @@
-{
-    "version": "2.0.0",
-    "tasks": [
-        {
-            "label": "q2 test",
-            "type": "shell",
-            "command": "make test"
-        }
-    ]
-}