fixing config

app/authenticators/oauth2.js

@@ -0,0 +1,6 @@
+import OAuth2PasswordGrant from 'ember-simple-auth/authenticators/oauth2-password-grant';
+import config from '../config/environment';
+
+export default OAuth2PasswordGrant.extend({
+  serverTokenEndpoint: `${config.apiURL}/api/authenticate`,
+});

app/authorizers/application.js

@@ -0,0 +1,3 @@
+import OAuth2Bearer from 'ember-simple-auth/authorizers/oauth2-bearer';
+
+export default OAuth2Bearer.extend({});

app/initializers/custom-session.js

@@ -1,9 +0,0 @@
-export function initialize(container, application) {
-  application.inject('session:custom', '_store', 'service:store');
-}
-
-export default {
-  name: 'custom-session',
-  after: 'ember-data',
-  initialize: initialize
-};

app/models/user.js

@@ -1,3 +1,4 @@
+import Ember from 'ember';
 import DS from 'ember-data';
 
 export default DS.Model.extend({
@@ -33,4 +34,13 @@ export default DS.Model.extend({
       return 'Error';
     }
   }.property('role'),
+
+  canWrite: Ember.computed('role', function() {
+    return this.get('role') !== 'R';
+  }),
+
+  metaData: Ember.computed('canWrite', function() {
+    return { 'canAdd': this.get('canWrite') };
+  }),
+
 });

app/pods/application/adapter.js

@@ -1,6 +1,9 @@
 import DS from 'ember-data';
+import DataAdapterMixin from 'ember-simple-auth/mixins/data-adapter-mixin';
+
+export default DS.RESTAdapter.extend(DataAdapterMixin, {
+  authorizer: 'authorizer:application',
 
-export default DS.RESTAdapter.extend({
   namespace: function() {
     return 'api/' + this.get('globals.genus');
   }.property(),

app/pods/application/route.js

@@ -1,5 +1,5 @@
 import Ember from 'ember';
-import ApplicationRouteMixin from 'simple-auth/mixins/application-route-mixin';
+import ApplicationRouteMixin from 'ember-simple-auth/mixins/application-route-mixin';
 
 export default Ember.Route.extend(ApplicationRouteMixin, {
   actions: {

app/pods/components/x-application/component.js

@@ -3,6 +3,9 @@ import Ember from 'ember';
 export default Ember.Component.extend({
   classNames: ["flakes-frame"],
 
+  session: Ember.inject.service('session'),
+  currentUser: Ember.inject.service('session-account'),
+
   didInsertElement: function() {
     FlakesFrame.init();
   },

app/pods/components/x-application/template.hbs

@@ -14,7 +14,7 @@
       {{#link-to 'protected.characteristics' tagName='li' href=false}}
         {{link-to 'Characteristics' 'protected.characteristics'}}
       {{/link-to}}
-      {{#if session.currentUser.isAdmin}}
+      {{#if currentUser.account.isAdmin}}
         {{#link-to 'protected.users' tagName='li' href=false}}
           {{link-to 'Users' 'protected.users'}}
         {{/link-to}}
@@ -24,7 +24,7 @@
       {{/link-to}}
     </ul>
     <p class="foot">
-      {{link-to session.currentUser.name 'protected.users.show' session.currentUser.id}}<br>
+      {{link-to currentUser.account.name 'protected.users.show' currentUser.account.id}}<br>
       <a {{action 'invalidateSession'}}>Logout</a>
     </p>
   {{else}}

app/pods/login/controller.js

@@ -1,21 +1,21 @@
 import Ember from 'ember';
 
 export default Ember.Controller.extend({
+  session: Ember.inject.service('session'),
+
   loading: false,
 
   actions: {
     authenticate: function() {
-      let credentials = this.getProperties('identification', 'password');
-      let session = this.get('session');
-      let authenticator = 'simple-auth-authenticator:jwt';
-
       // Manually clean up because there might not be a transition
       this.get('flashMessages').clearMessages();
-      this.set('loading', true).then(session.authenticate(authenticator, credentials).catch((error) => {
+      let { identification, password } = this.getProperties('identification', 'password');
+      this.set('loading', true)
+      this.get('session').authenticate('authenticator:oauth2', identification, password).catch((error) => {
         this.transitionToRoute('login');
         this.set('loading', false);
         this.get('flashMessages').error(error.error);
-      }));
+      });
       this.set('loading', false);
     }
   }

app/pods/login/route.js

@@ -1,4 +1,4 @@
 import Ember from 'ember';
-import UnauthenticatedRouteMixin from 'simple-auth/mixins/unauthenticated-route-mixin';
+import UnauthenticatedRouteMixin from 'ember-simple-auth/mixins/unauthenticated-route-mixin';
 
 export default Ember.Route.extend(UnauthenticatedRouteMixin, {});

app/pods/protected/characteristics/edit/controller.js

@@ -13,8 +13,9 @@ export default Ember.Controller.extend({
           ajaxError(characteristic.get('errors'), this.get('flashMessages'));
         });
       } else {
-        characteristic.deleteRecord();
-        this.transitionToRoute('protected.characteristics.show', characteristic);
+        characteristic.deleteRecord().then(() => {
+          this.transitionToRoute('protected.characteristics.show', characteristic);
+        });
       }
     },
 

app/pods/protected/characteristics/edit/route.js

@@ -1,10 +1,11 @@
 import Ember from 'ember';
-import AuthenticatedRouteMixin from 'simple-auth/mixins/authenticated-route-mixin';
 
-export default Ember.Route.extend(AuthenticatedRouteMixin, {
+export default Ember.Route.extend({
+  currentUser: Ember.inject.service('session-account'),
+
   beforeModel: function(transition) {
     this._super(transition);
-    this.get('session.currentUser').then((user) => {
+    this.get('currentUser.account').then((user) => {
       if (user.get('isReader')) {
         this.transitionTo('protected.characteristics.index');
       }

app/pods/protected/characteristics/index/route.js

@@ -1,13 +1,17 @@
 import Ember from 'ember';
 
 export default Ember.Route.extend({
+  currentUser: Ember.inject.service('session-account'),
+
   model: function() {
     return this.store.findAll('characteristic');
   },
 
   setupController: function(controller, model) {
     controller.set('model', model);
-    controller.set('metaData', this.store.metadataFor('characteristic'));
+    this.get('currentUser.account').then((user) => {
+      controller.set('metaData', user.get('metaData'));
+    });
   },
 
 });

app/pods/protected/characteristics/new/route.js

@@ -1,9 +1,11 @@
 import Ember from 'ember';
 
 export default Ember.Route.extend({
+  currentUser: Ember.inject.service('session-account'),
+
   beforeModel: function(transition) {
     this._super(transition);
-    this.get('session.currentUser').then((user) => {
+    this.get('currentUser.account').then((user) => {
       if (user.get('isReader')) {
         this.transitionTo('protected.characteristics.index');
       }

app/pods/protected/characteristics/show/controller.js

@@ -3,8 +3,9 @@ import Ember from 'ember';
 export default Ember.Controller.extend({
   actions: {
     delete: function() {
-      this.get('model').destroyRecord();
-      this.transitionToRoute('protected.characteristics.index');
+      this.get('model').destroyRecord().then(() => {
+        this.transitionToRoute('protected.characteristics.index');
+      });
     },
   },
 

app/pods/protected/compare/results/route.js

@@ -2,6 +2,8 @@ import Ember from 'ember';
 import ajaxRequest from '../../../../utils/ajax-request';
 
 export default Ember.Route.extend({
+  session: Ember.inject.service('session'),
+
   queryParams: {
     strain_ids: {
       refreshModel: true,
@@ -33,7 +35,7 @@ export default Ember.Route.extend({
       method: 'GET',
       data: params,
     };
-    return ajaxRequest(url, options);
+    return ajaxRequest(url, options, this.get('session'));
   },
 
   setupController: function(controller, model) {

app/pods/protected/route.js

@@ -1,5 +1,5 @@
 import Ember from 'ember';
-import AuthenticatedRouteMixin from 'simple-auth/mixins/authenticated-route-mixin';
+import AuthenticatedRouteMixin from 'ember-simple-auth/mixins/authenticated-route-mixin';
 
 export default Ember.Route.extend(AuthenticatedRouteMixin, {
   actions: {

app/pods/protected/species/edit/route.js

@@ -1,9 +1,11 @@
 import Ember from 'ember';
 
 export default Ember.Route.extend({
+  currentUser: Ember.inject.service('session-account'),
+
   beforeModel: function(transition) {
     this._super(transition);
-    this.get('session.currentUser').then((user) => {
+    this.get('currentUser.account').then((user) => {
       if (user.get('isReader')) {
         this.transitionTo('protected.species.index');
       }
@@ -18,7 +20,9 @@ export default Ember.Route.extend({
 
   setupController: function(controller, model) {
     controller.set('model', model);
-    controller.set('metaData', this.store.metadataFor('species'));
+    this.get('currentUser.account').then((user) => {
+      controller.set('metaData', user.get('metaData'));
+    });
   },
 
 });

app/pods/protected/species/index/route.js

@@ -1,13 +1,17 @@
 import Ember from 'ember';
 
 export default Ember.Route.extend({
+  currentUser: Ember.inject.service('session-account'),
+
   model: function() {
     return this.store.findAll('species');
   },
 
   setupController: function(controller, model) {
     controller.set('model', model);
-    controller.set('metaData', this.store.metadataFor('species'));
+    this.get('currentUser.account').then((user) => {
+      controller.set('metaData', user.get('metaData'));
+    });
   },
 
 });

app/pods/protected/species/new/controller.js

@@ -13,8 +13,9 @@ export default Ember.Controller.extend({
           ajaxError(species.get('errors'), this.get('flashMessages'));
         });
       } else {
-        species.deleteRecord();
-        this.transitionToRoute('protected.species.index');
+        species.deleteRecord().then(() => {
+          this.transitionToRoute('protected.species.index');
+        });
       }
     },
 

app/pods/protected/species/new/route.js

@@ -1,9 +1,11 @@
 import Ember from 'ember';
 
 export default Ember.Route.extend({
+  currentUser: Ember.inject.service('session-account'),
+
   beforeModel: function(transition) {
     this._super(transition);
-    this.get('session.currentUser').then((user) => {
+    this.get('currentUser.account').then((user) => {
       if (user.get('isReader')) {
         this.transitionTo('protected.species.index');
       }

app/pods/protected/species/show/controller.js

@@ -3,8 +3,9 @@ import Ember from 'ember';
 export default Ember.Controller.extend({
   actions: {
     delete: function() {
-      this.get('model').destroyRecord();
-      this.transitionToRoute('protected.species.index');
+      this.get('model').destroyRecord().then(() => {
+        this.transitionToRoute('protected.species.index');
+      });
     },
   },
 

app/pods/protected/strains/edit/controller.js

@@ -13,8 +13,9 @@ export default Ember.Controller.extend({
           ajaxError(strain.get('errors'), this.get('flashMessages'));
         });
       } else {
-        strain.deleteRecord();
-        this.transitionToRoute('protected.strains.show', strain);
+        strain.deleteRecord().then(() => {
+          this.transitionToRoute('protected.strains.show', strain);
+        });
       }
     },
 

app/pods/protected/strains/edit/route.js

@@ -1,10 +1,11 @@
 import Ember from 'ember';
-import AuthenticatedRouteMixin from 'simple-auth/mixins/authenticated-route-mixin';
 
-export default Ember.Route.extend(AuthenticatedRouteMixin, {
+export default Ember.Route.extend({
+  currentUser: Ember.inject.service('session-account'),
+
   beforeModel: function(transition) {
     this._super(transition);
-    this.get('session.currentUser').then((user) => {
+    this.get('currentUser.account').then((user) => {
       if (user.get('isReader')) {
         this.transitionTo('protected.strains.index');
       }
@@ -26,7 +27,9 @@ export default Ember.Route.extend(AuthenticatedRouteMixin, {
 
   setupController: function(controller, models) {
     controller.setProperties(models);
-    controller.set('metaData', this.store.metadataFor('strain'));
+    this.get('currentUser.account').then((user) => {
+      controller.set('metaData', user.get('metaData'));
+    });
   },
 
 });

app/pods/protected/strains/index/route.js

@@ -1,13 +1,17 @@
 import Ember from 'ember';
 
 export default Ember.Route.extend({
+  currentUser: Ember.inject.service('session-account'),
+
   model: function() {
     return this.store.findAll('strain');
   },
 
   setupController: function(controller, model) {
     controller.set('model', model);
-    controller.set('metaData', this.store.metadataFor('strain'));
+    this.get('currentUser.account').then((user) => {
+      controller.set('metaData', user.get('metaData'));
+    });
   },
 
 });

app/pods/protected/strains/new/route.js

@@ -1,9 +1,11 @@
 import Ember from 'ember';
 
 export default Ember.Route.extend({
+  currentUser: Ember.inject.service('session-account'),
+
   beforeModel: function(transition) {
     this._super(transition);
-    this.get('session.currentUser').then((user) => {
+    this.get('currentUser.account').then((user) => {
       if (user.get('isReader')) {
         this.transitionTo('protected.strains.index');
       }

app/pods/protected/strains/show/controller.js

@@ -3,8 +3,9 @@ import Ember from 'ember';
 export default Ember.Controller.extend({
   actions: {
     delete: function() {
-      this.get('model').destroyRecord();
-      this.transitionToRoute('protected.strains.index');
+      this.get('model').destroyRecord().then(() => {
+        this.transitionToRoute('protected.strains.index');
+      });
     },
   },
 

app/pods/protected/strains/show/route.js

@@ -1,7 +1,6 @@
 import Ember from 'ember';
-import AuthenticatedRouteMixin from 'simple-auth/mixins/authenticated-route-mixin';
 
-export default Ember.Route.extend(AuthenticatedRouteMixin, {
+export default Ember.Route.extend({
   model: function(params) {
     return this.store.findRecord('strain', params.strain_id, { reload: true });
   },

app/pods/protected/users/changepassword/controller.js

@@ -2,6 +2,9 @@ import Ember from 'ember';
 import ajaxRequest from '../../../../utils/ajax-request';
 
 export default Ember.Controller.extend({
+  session: Ember.inject.service('session'),
+  currentUser: Ember.inject.service('session-account'),
+
   passwordConfirm: null,
 
   actions: {
@@ -16,11 +19,11 @@ export default Ember.Controller.extend({
       let options = {
         method: 'POST',
         data: {
-          id: this.get('session.currentUser.id'),
+          id: this.get('currentUser.account.id'),
           password: this.get('password'),
         },
       };
-      ajaxRequest(url, options);
+      ajaxRequest(url, options, this.get('session'));
       this.transitionTo('protected.users.index');
       this.get('flashMessages').information('Your password has been changed.');
     },

app/pods/protected/users/changepassword/route.js

@@ -1,12 +1,14 @@
 import Ember from 'ember';
 
 export default Ember.Route.extend({
+  currentUser: Ember.inject.service('session-account'),
+
   beforeModel: function(transition) {
     this._super(transition);
 
     let user_id = transition.params['protected.users.changepassword'].user_id;
 
-    this.get('session.currentUser').then((user) => {
+    this.get('currentUser.account').then((user) => {
       if (user.get('id') !== user_id) {
         this.transitionTo('protected.users.index');
       }

app/pods/protected/users/edit/route.js

@@ -1,12 +1,14 @@
 import Ember from 'ember';
 
 export default Ember.Route.extend({
+  currentUser: Ember.inject.service('session-account'),
+
   beforeModel: function(transition) {
     this._super(transition);
 
     let user_id = transition.params['protected.users.edit'].user_id;
 
-    this.get('session.currentUser').then((user) => {
+    this.get('currentUser.account').then((user) => {
       if (user.get('id') !== user_id && !user.get('isAdmin')) {
         this.transitionTo('protected.users.index');
       }

app/pods/protected/users/edit/template.hbs

@@ -1,7 +1,7 @@
 {{
   protected/users/user-form
   user=model
-  currentUser=session.currentUser
+  currentUser=currentUser.account
   save="save"
   cancel="cancel"
 }}

app/pods/protected/users/index/route.js

@@ -1,9 +1,11 @@
 import Ember from 'ember';
 
 export default Ember.Route.extend({
+  currentUser: Ember.inject.service('session-account'),
+
   beforeModel: function(transition) {
     this._super(transition);
-    this.get('session.currentUser').then((user) => {
+    this.get('currentUser.account').then((user) => {
       if (!user.get('isAdmin')) {
         this.transitionTo('protected.index');
       }

app/pods/protected/users/show/controller.js

@@ -1,7 +1,9 @@
 import Ember from 'ember';
 
 export default Ember.Controller.extend({
-  isUser: Ember.computed('model.id', 'session.currentUser.id', function() {
-    return this.get('model.id') === this.get('session.currentUser.id');
+  currentUser: Ember.inject.service('session-account'),
+
+  isUser: Ember.computed('model.id', 'currentUser.account.id', function() {
+    return this.get('model.id') === this.get('currentUser.account.id');
   }),
 });

app/pods/protected/users/show/route.js

@@ -1,10 +1,12 @@
 import Ember from 'ember';
 
 export default Ember.Route.extend({
+  currentUser: Ember.inject.service('session-account'),
+
   beforeModel: function(transition) {
     this._super(transition);
 
-    this.get('session.currentUser').then((currentUser) => {
+    this.get('currentUser.account').then((currentUser) => {
       let user_id = transition.params['protected.users.show'].user_id;
       if (!currentUser.get('isAdmin') && currentUser.get('id') !== user_id) {
         this.transitionTo('protected.users.index');

app/pods/users/index/route.js

@@ -1,8 +0,0 @@
-import Ember from 'ember';
-import AuthenticatedRouteMixin from 'simple-auth/mixins/authenticated-route-mixin';
-
-export default Ember.Route.extend(AuthenticatedRouteMixin, {
-  model: function() {
-    return this.store.findAll('user');
-  }
-});

app/pods/users/index/template.hbs

@@ -1,3 +0,0 @@
-{{#each model as |user|}}
-  {{user.email}}<br>
-{{/each}}

app/pods/users/lockoutauthenticate/route.js

@@ -1,6 +1,8 @@
 import Ember from 'ember';
 
 export default Ember.Route.extend({
+  session: Ember.inject.service('session'),
+
   beforeModel: function(transition) {
     this._super(transition);
 

app/pods/users/new/route.js

@@ -1,5 +1,5 @@
 import Ember from 'ember';
-import UnauthenticatedRouteMixin from 'simple-auth/mixins/unauthenticated-route-mixin';
+import UnauthenticatedRouteMixin from 'ember-simple-auth/mixins/unauthenticated-route-mixin';
 
 export default Ember.Route.extend(UnauthenticatedRouteMixin, {
   model: function() {

app/pods/users/new/verify/route.js

@@ -2,6 +2,8 @@ import Ember from 'ember';
 import ajaxRequest from '../../../../utils/ajax-request';
 
 export default Ember.Route.extend({
+  session: Ember.inject.service('session'),
+
   apiURL: function() {
     return this.get('globals.apiURL');
   }.property(),
@@ -12,7 +14,7 @@ export default Ember.Route.extend({
 
   model: function(params) {
     let url = `${this.get('apiURL')}/api/${this.get('genus')}/users/verify/${params.nonce}`;
-    return ajaxRequest(url);
+    return ajaxRequest(url, {}, this.get('session'));
   },
 
 

app/pods/users/requestlockouthelp/controller.js

@@ -2,6 +2,8 @@ import Ember from 'ember';
 import ajaxRequest from '../../../utils/ajax-request';
 
 export default Ember.Controller.extend({
+  session: Ember.inject.service('session'),
+
   actions: {
     save: function() {
       let url = `${this.get('globals.apiURL')}/api/${this.get('globals.genus')}/users/lockout`;
@@ -9,7 +11,7 @@ export default Ember.Controller.extend({
         method: 'POST',
         data: { email: this.get('email') },
       };
-      ajaxRequest(url, options);
+      ajaxRequest(url, options, this.get('session'));
       this.transitionTo('login');
       this.get('flashMessages').information('Please check your email');
     },

app/services/session-account.js

@@ -0,0 +1,22 @@
+import Ember from 'ember';
+import DS from 'ember-data';
+import parseBase64 from '../utils/parse-base64';
+
+const { service } = Ember.inject;
+
+export default Ember.Service.extend({
+  session: service('session'),
+  store: service(),
+
+  account: Ember.computed('session.data.authenticated.access_token', function() {
+    const token = this.get('session.data.authenticated.access_token');
+    const claims = parseBase64(token);
+    const id = claims['sub'];
+
+    if (!Ember.isEmpty(id)) {
+      return DS.PromiseObject.create({
+        promise: this.get('store').findRecord('user', id),
+      });
+    }
+  })
+});

app/sessions/custom.js

@@ -1,12 +0,0 @@
-import Session from 'simple-auth/session';
-import parseBase64 from '../utils/parse-base64';
-
-export default Session.extend({
-  currentUser: function() {
-    let token = this.get('secure.token');
-    if (token && this.get('isAuthenticated')) {
-      let t = parseBase64(token);
-      return this._store.findRecord('user', t['sub']);
-    }
-  }.property('secure.token', 'isAuthenticated')
-});

app/utils/ajax-request.js

@@ -1,9 +1,14 @@
 import Ember from 'ember';
 
-export default function ajaxRequest(url, options) {
+export default function ajaxRequest(url, options, session) {
   return new Ember.RSVP.Promise(function(resolve, reject) {
     options = options || {};
     options.url = url;
+    session.authorize('authorizer:application', (headerName, headerValue) => {
+      let authHeader = {};
+      authHeader[headerName] = headerValue;
+      options.headers = authHeader;
+    });
     options.success = function(data) {
       resolve(data);
     };