From 43800d6dd83d3468225dc36884f5ea1af09b92f4 Mon Sep 17 00:00:00 2001
From: Matthew Dillon <mrdillon@alaska.edu>
Date: Thu, 18 Jun 2015 12:46:08 -0800
Subject: [PATCH] strain whole genome sequence

---
 app/models/strain.js                          | 33 ++++++++++---------
 .../components/strain-details/template.hbs    | 15 +++++++--
 server/mocks/strains.js                       |  4 +++
 3 files changed, 34 insertions(+), 18 deletions(-)

diff --git a/app/models/strain.js b/app/models/strain.js
index a3621e9..7f69f45 100644
--- a/app/models/strain.js
+++ b/app/models/strain.js
@@ -2,22 +2,23 @@ import DS from 'ember-data';
 import Ember from 'ember';
 
 export default DS.Model.extend({
-  measurements     : DS.hasMany('measurements', { async: true }),
-  species          : DS.belongsTo('species', { async: true }),
-  strainName       : DS.attr('string'),
-  typeStrain       : DS.attr('boolean'),
-  accessionNumbers : DS.attr('string'),
-  genbank          : DS.attr('string'),
-  isolatedFrom     : DS.attr('string'),
-  notes            : DS.attr('string'),
-  createdAt        : DS.attr('date'),
-  updatedAt        : DS.attr('date'),
-  deletedAt        : DS.attr('date'),
-  createdBy        : DS.attr('number'),
-  updatedBy        : DS.attr('number'),
-  deletedBy        : DS.attr('number'),
-  totalMeasurements: DS.attr('number'),
-  sortOrder        : DS.attr('number'),
+  measurements       : DS.hasMany('measurements', { async: true }),
+  species            : DS.belongsTo('species', { async: true }),
+  strainName         : DS.attr('string'),
+  typeStrain         : DS.attr('boolean'),
+  accessionNumbers   : DS.attr('string'),
+  genbank            : DS.attr('string'),
+  wholeGenomeSequence: DS.attr('string'),
+  isolatedFrom       : DS.attr('string'),
+  notes              : DS.attr('string'),
+  createdAt          : DS.attr('date'),
+  updatedAt          : DS.attr('date'),
+  deletedAt          : DS.attr('date'),
+  createdBy          : DS.attr('number'),
+  updatedBy          : DS.attr('number'),
+  deletedBy          : DS.attr('number'),
+  totalMeasurements  : DS.attr('number'),
+  sortOrder          : DS.attr('number'),
 
   strainNameMU: function() {
     let type = this.get('typeStrain') ? '<sup>T</sup>' : '';
diff --git a/app/pods/components/strain-details/template.hbs b/app/pods/components/strain-details/template.hbs
index f2d648f..9d6e9ca 100644
--- a/app/pods/components/strain-details/template.hbs
+++ b/app/pods/components/strain-details/template.hbs
@@ -5,7 +5,7 @@
         {{#if isEditing}}
           {{input value=strain.strainName}}
         {{else}}
-          <em>{{strain.strainName}}</em>
+          {{strain.strainNameMU}}
         {{/if}}
         {{display-errors a=strain.errors.strainName}}
     </legend>
@@ -43,7 +43,7 @@
     </div>
 
     {{! ROW 2 }}
-    <div class="grid-4">
+    <div class="grid-6">
       <dl class="span-2">
         <dt>Accession Numbers</dt>
         <dd>
@@ -66,6 +66,17 @@
           {{display-errors a=strain.errors.genbank}}
         </dd>
       </dl>
+      <dl class="span-2">
+        <dt>Whole Genome Sequence</dt>
+        <dd>
+          {{#if isEditing}}
+            {{input value=strain.wholeGenomeSequence}}
+          {{else}}
+            {{strain.wholeGenomeSequence}}
+          {{/if}}
+          {{display-errors a=strain.errors.wholeGenomeSequence}}
+        </dd>
+      </dl>
     </div>
 
     {{! ROW 3 }}
diff --git a/server/mocks/strains.js b/server/mocks/strains.js
index 2a39419..d98fc96 100644
--- a/server/mocks/strains.js
+++ b/server/mocks/strains.js
@@ -10,6 +10,7 @@ module.exports = function(app) {
       typeStrain: true,
       accessionNumbers: "Test Accession",
       genbank: "Test Genbank",
+      wholeGenomeSequence: "Seq123",
       isolatedFrom: "Location 1",
       measurements: [1,2,3,4,5],
       createdAt: "0001-01-01T00:00:00Z",
@@ -29,6 +30,7 @@ module.exports = function(app) {
       typeStrain: false,
       accessionNumbers: "Test Accession",
       genbank: "Test Genbank",
+      wholeGenomeSequence: null,
       isolatedFrom: "Location 2",
       measurements: [6,7,8,9,10],
       createdAt: "0001-01-01T00:00:00Z",
@@ -48,6 +50,7 @@ module.exports = function(app) {
       typeStrain: true,
       accessionNumbers: "Test Accession",
       genbank: "Test Genbank",
+      wholeGenomeSequence: "Seq123",
       isolatedFrom: "Location 1",
       measurements: [],
       createdAt: "0001-01-01T00:00:00Z",
@@ -67,6 +70,7 @@ module.exports = function(app) {
       typeStrain: true,
       accessionNumbers: "Test Accession",
       genbank: "Test Genbank",
+      wholeGenomeSequence: "Seq123",
       isolatedFrom: "Location 2",
       measurements: [],
       createdAt: "0001-01-01T00:00:00Z",