Merge branch 'master' into clostridium

* master:
  Working on deprecations

app/initializers/custom-session.js

@@ -7,7 +7,7 @@ var CustomSession = Session.extend({
     let token = this.get('secure.token');
     if (!Ember.isEmpty(token)) {
       let t = parseBase64(token);
-      return this.container.lookup('store:main').find('user', t['sub']);
+      return this.container.lookup('service:store').find('user', t['sub']);
     }
     return null;
   }.property('secure.token'),

app/pods/application/adapter.js

@@ -29,4 +29,13 @@ export default DS.RESTAdapter.extend({
       return error;
     }
   },
+
+  shouldReloadAll: function() {
+    return true;
+  },
+
+  shouldBackgroundReloadRecord: function() {
+    return false;
+  }
+
 });

app/pods/protected/species/edit/controller.js

@@ -5,7 +5,7 @@ export default Ember.Controller.extend({
     save: function() {
       let species = this.get('model');
 
-      if (species.get('isDirty')) {
+      if (species.get('hasDirtyAttributes')) {
         species.save().then((species) => {
           this.transitionToRoute('protected.species.show', species);
         }, (err) => {

app/pods/protected/species/index/controller.js

@@ -3,9 +3,4 @@ import Ember from 'ember';
 export default Ember.Controller.extend({
   sortParams: ['speciesName', 'strainCount'],
   sortedSpecies: Ember.computed.sort('model', 'sortParams'),
-
-  metaData: function() {
-    return Ember.copy(this.store.metadataFor('species'));
-  }.property('model.isLoaded').readOnly(),
-
 });

app/pods/protected/species/index/route.js

@@ -3,5 +3,11 @@ import Ember from 'ember';
 export default Ember.Route.extend({
   model: function() {
     return this.store.findAll('species');
-  }
+  },
+
+  setupController: function(controller, model) {
+    controller.set('model', model);
+    controller.set('metaData', this.store.metadataFor('species'));
+  },
+
 });

app/pods/protected/species/new/controller.js

@@ -5,7 +5,7 @@ export default Ember.Controller.extend({
     save: function() {
       let species = this.get('model');
 
-      if (species.get('isDirty')) {
+      if (species.get('hasDirtyAttributes')) {
         species.save().then((species) => {
           this.transitionToRoute('protected.species.show', species.get('id'));
         }, (err) => {

app/pods/protected/strains/edit/controller.js

@@ -5,7 +5,7 @@ export default Ember.Controller.extend({
     save: function() {
       let strain = this.get('strain');
 
-      if (strain.get('isDirty')) {
+      if (strain.get('hasDirtyAttributes')) {
         strain.save().then((strain) => {
           this.transitionToRoute('protected.strains.show', strain);
         }, (err) => {

app/pods/protected/strains/index/controller.js

@@ -3,9 +3,4 @@ import Ember from 'ember';
 export default Ember.Controller.extend({
   sortParams: ['fullNameMU', 'totalMeasurements'],
   sortedStrains: Ember.computed.sort('model', 'sortParams'),
-
-  metaData: function() {
-    return Ember.copy(this.store.metadataFor('strain'));
-  }.property('model.isLoaded').readOnly(),
-
 });

app/pods/protected/strains/index/route.js

@@ -4,4 +4,10 @@ export default Ember.Route.extend({
   model: function() {
     return this.store.findAll('strain');
   },
+
+  setupController: function(controller, model) {
+    controller.set('model', model);
+    controller.set('metaData', this.store.metadataFor('strain'));
+  },
+
 });

app/pods/protected/strains/index/template.hbs

@@ -14,7 +14,7 @@
     {{#each sortedStrains as |row|}}
       <tr>
         <td>
-          {{#link-to 'protected.strains.show' row.id classBinding="data.typeStrain:type-strain"}}
+          {{#link-to 'protected.strains.show' row classBinding="data.typeStrain:type-strain"}}
             {{row.fullNameMU}}
           {{/link-to}}
         </td>

app/pods/protected/strains/new/controller.js

@@ -5,7 +5,7 @@ export default Ember.Controller.extend({
     save: function() {
       let strain = this.get('strain');
 
-      if (strain.get('isDirty')) {
+      if (strain.get('hasDirtyAttributes')) {
         strain.save().then((strain) => {
           this.transitionToRoute('protected.strains.show', strain);
         }, (err) => {

app/pods/users/new/new-user-form/component.js

@@ -15,7 +15,7 @@ export default Ember.Component.extend({
         return;
       }
 
-      if (user.get('isDirty')) {
+      if (user.get('hasDirtyAttributes')) {
         user.save().then(() => {
           this.sendAction();
         }).catch(() => {