diff --git a/.gitignore b/.gitignore index 08e02d8..581ad43 100644 --- a/.gitignore +++ b/.gitignore @@ -15,4 +15,4 @@ /libpeerconnection.log npm-debug.log testem.log -.firebase +.divshot-cache \ No newline at end of file diff --git a/app/adapters/user.js b/app/adapters/user.js deleted file mode 100644 index 689a6ec..0000000 --- a/app/adapters/user.js +++ /dev/null @@ -1,7 +0,0 @@ -import ApplicationAdapter from '../adapters/application'; - -export default ApplicationAdapter.extend({ - // If coalesceFindRequests is on, and we 403 on any requests, ESA logs - // the current user out. Better to split the requests up at the adapter level. - coalesceFindRequests: false, -}); diff --git a/app/authenticators/oauth2.js b/app/authenticators/oauth2.js index 7662be1..c5c9221 100644 --- a/app/authenticators/oauth2.js +++ b/app/authenticators/oauth2.js @@ -1,70 +1,6 @@ import OAuth2PasswordGrant from 'ember-simple-auth/authenticators/oauth2-password-grant'; import config from '../config/environment'; -import parseBase64 from '../utils/parse-base64'; -import Ember from 'ember'; -const { RSVP: { Promise }, isEmpty, run, Logger: { warn } } = Ember; export default OAuth2PasswordGrant.extend({ serverTokenEndpoint: `${config.apiURL}/api/authenticate`, - serverTokenRefreshEndpoint: `${config.apiURL}/api/refresh`, - - authenticate: function(identification, password) { - return new Promise((resolve, reject) => { - const data = { username: identification, password }; - const serverTokenEndpoint = this.get('serverTokenEndpoint'); - this.makeRequest(serverTokenEndpoint, data).then((response) => { - run(() => { - const token = parseBase64(response['access_token']); - const expiresAt = this._absolutizeExpirationTime(token['exp']); - this._scheduleAccessTokenRefresh(expiresAt, response['access_token']); - if (!isEmpty(expiresAt)) { - response = Ember.merge(response, { 'expires_at': expiresAt }); - } - resolve(response); - }); - }, (xhr) => { - run(null, reject, xhr.responseJSON || xhr.responseText); - }); - }); - }, - - _scheduleAccessTokenRefresh: function(expiresAt, accessToken) { - if (this.get('refreshAccessTokens')) { - const now = (new Date()).getTime(); - const offset = (Math.floor(Math.random() * 5) + 5) * 1000; - if (!isEmpty(accessToken) && !isEmpty(expiresAt) && expiresAt > now - offset) { - run.cancel(this._refreshTokenTimeout); - delete this._refreshTokenTimeout; - if (!Ember.testing) { - this._refreshTokenTimeout = run.later(this, this._refreshAccessToken, expiresAt, accessToken, expiresAt - now - offset); - } - } - } - }, - - _refreshAccessToken: function(expiresAt, accessToken) { - const data = { 'token': accessToken }; - const serverTokenRefreshEndpoint = this.get('serverTokenRefreshEndpoint'); - return new Promise((resolve, reject) => { - this.makeRequest(serverTokenRefreshEndpoint, data).then((response) => { - run(() => { - const token = parseBase64(response['access_token']); - const expiresAt = this._absolutizeExpirationTime(token['exp']); - const data = Ember.merge(response, { 'expires_at': expiresAt }); - this._scheduleAccessTokenRefresh(expiresAt, response['access_token']); - this.trigger('sessionDataUpdated', data); - resolve(data); - }); - }, (xhr, status, error) => { - warn(`Access token could not be refreshed - server responded with ${error}.`); - reject(); - }); - }); - }, - - _absolutizeExpirationTime: function(expiresAt) { - if (!isEmpty(expiresAt)) { - return new Date(expiresAt * 1000).getTime(); - } - } }); diff --git a/app/helpers/get-property.js b/app/helpers/get-property.js index 4ba442b..9801d7b 100644 --- a/app/helpers/get-property.js +++ b/app/helpers/get-property.js @@ -2,6 +2,7 @@ import Ember from 'ember'; const { get, Helper: { helper } } = Ember; +// This will be unneccesary when ember 2.0 lands export default helper(function(params) { return get(params[0], params[1]); }); diff --git a/app/initializers/global-variables.js b/app/initializers/global-variables.js new file mode 100644 index 0000000..554e6d8 --- /dev/null +++ b/app/initializers/global-variables.js @@ -0,0 +1,20 @@ +import Ember from 'ember'; +import config from '../config/environment'; + +var globals = Ember.Object.extend({ + genus: config.APP.genus, + apiURL: config.apiURL, +}); + +export function initialize(container, application) { + application.register('service:globals', globals, {singleton: true}); + application.inject('route', 'globals', 'service:globals'); + application.inject('controller', 'globals', 'service:globals'); + application.inject('component', 'globals', 'service:globals'); + application.inject('adapter', 'globals', 'service:globals'); +} + +export default { + name: 'global-variables', + initialize: initialize +}; diff --git a/app/mirage/config.js b/app/mirage/config.js index 418da09..935eb17 100644 --- a/app/mirage/config.js +++ b/app/mirage/config.js @@ -19,13 +19,11 @@ export function testConfig() { this.post('/species'); this.get('/species/:id'); this.put('/species/:id'); - this.delete('/species/:id'); this.get('/characteristics'); this.post('/characteristics'); this.get('/characteristics/:id'); this.put('/characteristics/:id'); - this.delete('/characteristics/:id'); this.get('/strains', function(db /*, request*/) { return { @@ -41,5 +39,4 @@ export function testConfig() { }; }); this.put('/strains/:id'); - this.delete('/strains/:id'); } diff --git a/app/mixins/delete-model.js b/app/mixins/delete-model.js index 9e113a0..e16fb76 100644 --- a/app/mixins/delete-model.js +++ b/app/mixins/delete-model.js @@ -8,10 +8,6 @@ export default Mixin.create({ actions: { delete: function() { this.get('model').destroyRecord().then(() => { - // Instead of unloading the entire store, we keep the loaded user models - ['species', 'strain', 'characteristic', 'measurement'].map((model) => { - this.get('store').unloadAll(model); - }); this.transitionToRoute(this.get('transitionRoute')); }); }, diff --git a/app/mixins/save-model.js b/app/mixins/save-model.js index 2b652ff..d4459e3 100644 --- a/app/mixins/save-model.js +++ b/app/mixins/save-model.js @@ -23,16 +23,11 @@ export default Mixin.create({ cancel: function() { const model = this.get('model'); - const isNew = model.get('isNew'); model.get('errors').clear(); model.rollbackAttributes(); - if (isNew) { - this.transitionToRoute(this.get('fallbackRouteCancel')); - } else { - this.transitionToRoute(this.get('fallbackRouteCancel'), model); - } + this.transitionToRoute(this.get('fallbackRouteCancel'), model); }, }, }); diff --git a/app/models/species.js b/app/models/species.js index 362462b..7581d10 100644 --- a/app/models/species.js +++ b/app/models/species.js @@ -1,5 +1,6 @@ import DS from 'ember-data'; import config from '../config/environment'; +import Ember from 'ember'; const { Model, attr, hasMany } = DS; @@ -16,4 +17,9 @@ export default Model.extend({ updatedBy : attr('number'), sortOrder : attr('number'), canEdit : attr('boolean'), + + // TODO: move this to component/helper + speciesNameMU: function() { + return Ember.String.htmlSafe(`${this.get('speciesName')}`); + }.property('speciesName').readOnly(), }); diff --git a/app/models/strain.js b/app/models/strain.js index 04489a0..b202a78 100644 --- a/app/models/strain.js +++ b/app/models/strain.js @@ -2,7 +2,6 @@ import DS from 'ember-data'; import Ember from 'ember'; const { Model, hasMany, belongsTo, attr } = DS; -const { computed, String: { htmlSafe } } = Ember; export default Model.extend({ measurements : hasMany('measurements', { async: false }), @@ -23,8 +22,19 @@ export default Model.extend({ sortOrder : attr('number'), canEdit : attr('boolean'), - fullNameMU: computed('species', 'strainName', function() { - const type = this.get('typeStrain') ? 'T' : ''; - return htmlSafe(`${this.get('species.speciesName')} ${this.get('strainName')}${type}`); + // TODO: move this to component/helper + strainNameMU: function() { + let type = this.get('typeStrain') ? 'T' : ''; + return Ember.String.htmlSafe(`${this.get('strainName')}${type}`); + }.property('strainName', 'typeStrain').readOnly(), + + // TODO: move this to component/helper + fullName: Ember.computed('species', 'strainName', function() { + return `${this.get('species.speciesName')} ${this.get('strainNameMU')}`; }), + + // TODO: move this to component/helper + fullNameMU: function() { + return Ember.String.htmlSafe(`${this.get('species.speciesName')} ${this.get('strainNameMU')}`); + }.property('species', 'strainNameMU').readOnly(), }); diff --git a/app/adapters/application.js b/app/pods/application/adapter.js similarity index 86% rename from app/adapters/application.js rename to app/pods/application/adapter.js index aa4cbcf..0d7ed91 100644 --- a/app/adapters/application.js +++ b/app/pods/application/adapter.js @@ -1,13 +1,9 @@ import DS from 'ember-data'; import DataAdapterMixin from 'ember-simple-auth/mixins/data-adapter-mixin'; -import Ember from 'ember'; -const { inject: { service } } = Ember; const { RESTAdapter } = DS; export default RESTAdapter.extend(DataAdapterMixin, { - globals: service(), - authorizer: 'authorizer:application', namespace: function() { diff --git a/app/pods/components/delete-button/component.js b/app/pods/components/delete-button/component.js index 77fc1d0..2ceca5b 100644 --- a/app/pods/components/delete-button/component.js +++ b/app/pods/components/delete-button/component.js @@ -1,23 +1,13 @@ import Ember from 'ember'; -const { Component } = Ember; +export default Ember.Component.extend({ + tagName: 'button', + classNames: ["button-red", "smaller"], -export default Component.extend({ - tagName: 'span', - showConfirmDelete: false, - - actions: { - initialClick: function() { - this.set('showConfirmDelete', true); - }, - - cancelDelete: function() { - this.set('showConfirmDelete', false); - }, - - confirmDelete: function() { + click: function() { + if (window.confirm("Do you really want to delete this?")) { this.attrs.delete(); - }, + } }, }); diff --git a/app/pods/components/delete-button/template.hbs b/app/pods/components/delete-button/template.hbs index 0fd90d7..4b2e04f 100644 --- a/app/pods/components/delete-button/template.hbs +++ b/app/pods/components/delete-button/template.hbs @@ -1,12 +1 @@ -{{#unless showConfirmDelete}} - -{{else}} - - -{{/unless}} +Delete diff --git a/app/pods/components/genus-name/component.js b/app/pods/components/genus-name/component.js index 23cb0a1..ce66e93 100644 --- a/app/pods/components/genus-name/component.js +++ b/app/pods/components/genus-name/component.js @@ -1,14 +1,8 @@ import Ember from 'ember'; -const { Component, computed, inject: { service } } = Ember; - -export default Component.extend({ - globals: service(), - +export default Ember.Component.extend({ tagName: 'em', - - genus: computed('globals.genus', function() { + genus: function() { return this.get('globals.genus').capitalize(); - }), - + }.property().readOnly(), }); diff --git a/app/pods/components/site-logo/component.js b/app/pods/components/site-logo/component.js index 2e79985..6e705e6 100644 --- a/app/pods/components/site-logo/component.js +++ b/app/pods/components/site-logo/component.js @@ -1,7 +1,3 @@ import Ember from 'ember'; -const { Component, inject: { service } } = Ember; - -export default Component.extend({ - globals: service(), -}); +export default Ember.Component.extend({}); diff --git a/app/pods/components/strain-name/template.hbs b/app/pods/components/strain-name/template.hbs deleted file mode 100644 index 38822c5..0000000 --- a/app/pods/components/strain-name/template.hbs +++ /dev/null @@ -1 +0,0 @@ -{{strain.strainName}}{{{if strain.typeStrain 'T' ''}}} diff --git a/app/pods/components/text-editor/component.js b/app/pods/components/text-editor/component.js index 5fca82d..01d00fd 100644 --- a/app/pods/components/text-editor/component.js +++ b/app/pods/components/text-editor/component.js @@ -1,25 +1,13 @@ import Ember from 'ember'; /* global Quill */ -const { Component } = Ember; - -export default Component.extend({ - // Passed in - value: null, - - // Internal +export default Ember.Component.extend({ quill: null, - - didReceiveAttrs() { - this._super(...arguments); - - if (!this.attrs.update) { - throw new Error(`You must provide an \`update\` action.`); - } - }, + value: null, + update: null, didInsertElement: function() { - const quill = new Quill(`#${this.get('elementId')} .editor`, { + let quill = new Quill(`#${this.get('elementId')} .editor`, { formats: ['bold', 'italic', 'underline'], modules: { 'toolbar': { container: `#${this.get('elementId')} .toolbar` } diff --git a/app/pods/components/x-application/component.js b/app/pods/components/x-application/component.js index edb934e..967b497 100644 --- a/app/pods/components/x-application/component.js +++ b/app/pods/components/x-application/component.js @@ -1,12 +1,10 @@ import Ember from 'ember'; -const { Component, inject: { service } } = Ember; - -export default Component.extend({ +export default Ember.Component.extend({ classNames: ["flakes-frame"], - session: service(), - currentUser: service('session-account'), + session: Ember.inject.service('session'), + currentUser: Ember.inject.service('session-account'), didInsertElement: function() { FlakesFrame.init(); diff --git a/app/pods/components/x-application/template.hbs b/app/pods/components/x-application/template.hbs index 386353d..49cc38e 100644 --- a/app/pods/components/x-application/template.hbs +++ b/app/pods/components/x-application/template.hbs @@ -33,7 +33,7 @@
{{link-to 'Sign Up' 'users.new'}}
- {{link-to 'Reset Password' 'users.requestlockouthelp'}} + {{link-to 'Locked Out?' 'users.requestlockouthelp'}}

{{/if}} diff --git a/app/pods/components/x-select/component.js b/app/pods/components/x-select/component.js index 681597b..129b943 100644 --- a/app/pods/components/x-select/component.js +++ b/app/pods/components/x-select/component.js @@ -1,54 +1,50 @@ import Ember from 'ember'; -const { Component, get, run: { schedule } } = Ember; +const { Component, isEmpty } = Ember; export default Component.extend({ tagName: 'select', + + nameAttr: null, + listItems: null, + placeholder: null, + selected: null, + selectize: null, + multiple: false, + attributeBindings: [ 'multiple', ], - options: null, - selected: null, - nameAttr: null, - placeholder: null, - change: function() { - let selectedInComponent = this.get('selected'); - let selectedInWidget = this.$().val(); - - if (this.get('multiple')) { - if (selectedInWidget === null) { - selectedInWidget = []; - } - selectedInComponent = selectedInComponent.toString(); - selectedInWidget = selectedInWidget.toString(); - } - - // We need this to prevent an infinite loop of afterRender -> change. - if (selectedInComponent !== selectedInWidget) { - this.attrs.update(this.$().val()); - } + this.attrs["update"](this.$()[0].selectize.getValue()); }, - didInsertElement: function() { - let options = {}; - options.placeholder = this.get('placeholder'); - options.templateResult = function(item) { - if (!item.disabled) { - const text = get(item, 'element.innerHTML'); - const $item = Ember.$(`${text}`); - return $item; - } - }; - this.$().select2(options); - }, + didReceiveAttrs: function() { + this._super(...arguments); + console.log('didReceiveAttrs'); - didRender: function() { - const selected = this.get('selected'); - schedule('afterRender', this, function() { - this.$().val(selected).trigger('change'); + if (!this.attrs.update) { + throw new Error(`You must provide an \`update\` action.`); + } + + Ember.run.schedule('actions', this, () => { + console.log('before adding'); + this.$()[0].selectize.setValue(this.get('selected'), true); + console.log('after adding') }); }, + didInsertElement: function() { + console.log('didInsertElement'); + const options = { + closeAfterSelect: true, + selectOnTab: true, + plugins: ['drag_drop'], + items: this.get('selected'), + } + + this.$().selectize(options); + }, + }); diff --git a/app/pods/components/x-select/template.hbs b/app/pods/components/x-select/template.hbs index 131449b..093ed1e 100644 --- a/app/pods/components/x-select/template.hbs +++ b/app/pods/components/x-select/template.hbs @@ -1,3 +1,6 @@ -{{#each options as |option|}} - +{{#if placeholder}} + +{{/if}} +{{#each listItems as |option|}} + {{/each}} diff --git a/app/pods/login/login-form/template.hbs b/app/pods/login/login-form/template.hbs index 52773ca..45afb9b 100644 --- a/app/pods/login/login-form/template.hbs +++ b/app/pods/login/login-form/template.hbs @@ -10,7 +10,3 @@
{{link-to 'Forget your password?' 'users.requestlockouthelp'}}
-
-
- Just checking things out? Log in with email read-only and password bacteria! -
diff --git a/app/pods/protected/characteristics/show/characteristic-card/template.hbs b/app/pods/protected/characteristics/show/characteristic-card/template.hbs index a7520fd..e404106 100644 --- a/app/pods/protected/characteristics/show/characteristic-card/template.hbs +++ b/app/pods/protected/characteristics/show/characteristic-card/template.hbs @@ -26,6 +26,7 @@
Measurements
+

To add/edit/remove a measurement, please visit the strain's page (links below)

{{protected/characteristics/show/measurements-table characteristic=characteristic}}
diff --git a/app/pods/protected/characteristics/show/measurements-table/component.js b/app/pods/protected/characteristics/show/measurements-table/component.js index e1d47d2..96b79fc 100644 --- a/app/pods/protected/characteristics/show/measurements-table/component.js +++ b/app/pods/protected/characteristics/show/measurements-table/component.js @@ -1,7 +1,7 @@ import Ember from 'ember'; const { Component, computed } = Ember; -const { alias, sort } = computed; +const { sort } = computed; export default Component.extend({ characteristic: null, @@ -10,9 +10,10 @@ export default Component.extend({ return this.get('characteristic.measurements.length') > 0; }), - measurements: alias('characteristic.measurements'), - sortParams: ['strain.sortOrder'], - sortedMeasurements: sort('measurements', 'sortParams'), + sortParams: ['characteristic.characteristicTypeName', 'characteristic.sortOrder', 'characteristic.characteristicName'], + sortAsc: true, + paramsChanged: false, + sortedMeasurements: sort('characteristic.measurements', 'sortParams'), actions: { changeSortParam: function(col) { diff --git a/app/pods/protected/characteristics/show/measurements-table/template.hbs b/app/pods/protected/characteristics/show/measurements-table/template.hbs index 74ce23b..8ee1a86 100644 --- a/app/pods/protected/characteristics/show/measurements-table/template.hbs +++ b/app/pods/protected/characteristics/show/measurements-table/template.hbs @@ -7,24 +7,24 @@ - + - {{#each sortedMeasurements as |measurement|}} + {{#each sortedMeasurements as |row|}} {{/each}} diff --git a/app/pods/protected/characteristics/show/route.js b/app/pods/protected/characteristics/show/route.js index d6394ce..0f50705 100644 --- a/app/pods/protected/characteristics/show/route.js +++ b/app/pods/protected/characteristics/show/route.js @@ -4,7 +4,7 @@ const { Route } = Ember; export default Route.extend({ model: function(params) { - return this.store.findRecord('characteristic', params.characteristic_id, { reload: true }); + return this.store.findRecord('characteristic', params.characteristic_id); }, }); diff --git a/app/pods/protected/compare/controller.js b/app/pods/protected/compare/controller.js index 378407e..7e0d72d 100644 --- a/app/pods/protected/compare/controller.js +++ b/app/pods/protected/compare/controller.js @@ -3,8 +3,8 @@ import Ember from 'ember'; const { Controller } = Ember; export default Controller.extend({ - selectedStrains: [], - selectedCharacteristics: [], + selectedStrains: null, + selectedCharacteristics: null, actions: { search: function(query) { @@ -12,10 +12,12 @@ export default Controller.extend({ }, updateStrainSelection: function(selection) { + console.log(selection); this.set('selectedStrains', selection); }, updateCharacteristicSelection: function(selection) { + console.log(selection); this.set('selectedCharacteristics', selection); }, } diff --git a/app/pods/protected/compare/results/results-table/component.js b/app/pods/protected/compare/results/results-table/component.js index 1fa35ac..87b2369 100644 --- a/app/pods/protected/compare/results/results-table/component.js +++ b/app/pods/protected/compare/results/results-table/component.js @@ -4,7 +4,6 @@ const { Component, computed, inject: { service } } = Ember; export default Component.extend({ session: service(), - globals: service(), strains: null, characteristics: null, diff --git a/app/pods/protected/compare/results/results-table/template.hbs b/app/pods/protected/compare/results/results-table/template.hbs index 3ecfe46..c90d3bc 100644 --- a/app/pods/protected/compare/results/results-table/template.hbs +++ b/app/pods/protected/compare/results/results-table/template.hbs @@ -14,16 +14,8 @@ {{#each characteristics as |row|}} - {{#each row key="@index" as |col index|}} - + {{#each row key="@index" as |col|}} + {{/each}} {{/each}} diff --git a/app/pods/protected/compare/results/route.js b/app/pods/protected/compare/results/route.js index 6085d85..72c01f2 100644 --- a/app/pods/protected/compare/results/route.js +++ b/app/pods/protected/compare/results/route.js @@ -30,15 +30,16 @@ export default Route.extend({ } const compare = this.controllerFor('protected.compare'); - compare.set('selectedStrains', params.strain_ids.split(",")); - compare.set('selectedCharacteristics', params.characteristic_ids.split(",")); + compare.set('selectedStrains', params.strain_ids.split(',')); + compare.set('selectedCharacteristics', params.characteristic_ids.split(',')); return this.get('ajax').request('/compare', { data: params }); }, setupController: function(controller, model) { model.forEach((m, i) => { - model[i][0] = this.store.peekRecord('characteristic', m[0]); + const c = this.store.peekRecord('characteristic', m[0]); + model[i][0] = c.get('characteristicName'); }); const compare = this.controllerFor('protected.compare'); diff --git a/app/pods/protected/compare/select-form/component.js b/app/pods/protected/compare/select-form/component.js index 692be67..8c90170 100644 --- a/app/pods/protected/compare/select-form/component.js +++ b/app/pods/protected/compare/select-form/component.js @@ -1,6 +1,6 @@ import Ember from 'ember'; -const { Component, computed: { sort } } = Ember; +const { Component } = Ember; export default Component.extend({ characteristics: null, @@ -10,23 +10,12 @@ export default Component.extend({ "update-strains": null, "update-characteristics": null, - - charSortParams: ['characteristicTypeName', 'sortOrder', 'characteristicName'], - sortedCharacteristics: sort('characteristics', 'charSortParams'), - strainSortParams: ['sortOrder'], - sortedStrains: sort('strains', 'sortParams'), - - selectedStrains: [], - selectedCharacteristics: [], - updateStrains: function(selection) { - this.set('selectedStrains', selection); - this.attrs['update-strains'](this.get('selectedStrains')); + this.attrs["update-strains"](selection); }, updateCharacteristics: function(selection) { - this.set('selectedCharacteristics', selection); - this.attrs['update-characteristics'](this.get('selectedCharacteristics')); + this.attrs['update-characteristics'](selection); }, actions: { @@ -68,7 +57,7 @@ export default Component.extend({ this.updateStrains(selection); }, - updateCharacteristicsSelection: function(selection) { + updateCharacteristicSelection: function(selection) { this.updateCharacteristics(selection); }, }, diff --git a/app/pods/protected/compare/select-form/template.hbs b/app/pods/protected/compare/select-form/template.hbs index 331535d..6bf7985 100644 --- a/app/pods/protected/compare/select-form/template.hbs +++ b/app/pods/protected/compare/select-form/template.hbs @@ -6,12 +6,12 @@ {{ x-select - options=sortedStrains - nameAttr='fullNameMU' + listItems=strains + nameAttr="fullNameMU" + update=(action "updateStrainSelection") + placeholder="Select one ore more strains" multiple=true selected=selectedStrains - update=(action "updateStrainSelection") - placeholder="Select one or more strains" }}
  • @@ -26,12 +26,12 @@ {{ x-select - options=sortedCharacteristics - nameAttr='characteristicName' + listItems=characteristics + nameAttr="characteristicName" + update=(action "updateCharacteristicSelection") + placeholder="Select one ore more characteristics" multiple=true selected=selectedCharacteristics - update=(action "updateCharacteristicsSelection") - placeholder="Select one or more characteristics" }}
  • diff --git a/app/pods/protected/species/index/species-table/component.js b/app/pods/protected/species/index/species-table/component.js index 53e46a1..528c48d 100644 --- a/app/pods/protected/species/index/species-table/component.js +++ b/app/pods/protected/species/index/species-table/component.js @@ -6,7 +6,7 @@ const { Component, computed: { sort } } = Ember; export default Component.extend(SetupMetaData, { species: null, - sortParams: ['sortOrder'], + sortParams: ['speciesName', 'strainCount'], sortedSpecies: sort('species', 'sortParams'), }); diff --git a/app/pods/protected/species/index/species-table/template.hbs b/app/pods/protected/species/index/species-table/template.hbs index ab9d772..f96f9cf 100644 --- a/app/pods/protected/species/index/species-table/template.hbs +++ b/app/pods/protected/species/index/species-table/template.hbs @@ -23,7 +23,7 @@ {{#each species.strains as |strain index|}} {{if index ","}} {{#link-to 'protected.strains.show' strain.id}} - {{strain-name strain=strain}} + {{{strain.strainNameMU}}} {{/link-to}} {{/each}} diff --git a/app/pods/protected/species/show/route.js b/app/pods/protected/species/show/route.js index ac07e8f..c99362f 100644 --- a/app/pods/protected/species/show/route.js +++ b/app/pods/protected/species/show/route.js @@ -4,7 +4,7 @@ const { Route } = Ember; export default Route.extend({ model: function(params) { - return this.store.findRecord('species', params.species_id, { reload: true }); + return this.store.findRecord('species', params.species_id); }, }); diff --git a/app/pods/protected/species/show/species-card/template.hbs b/app/pods/protected/species/show/species-card/template.hbs index b4e753d..fac8247 100644 --- a/app/pods/protected/species/show/species-card/template.hbs +++ b/app/pods/protected/species/show/species-card/template.hbs @@ -14,7 +14,7 @@ {{#each species.strains as |strain index|}}
  • {{#link-to 'protected.strains.show' strain.id}} - {{strain-name strain=strain}} + {{{strain.strainNameMU}}} {{/link-to}}
    • {{/each}} diff --git a/app/pods/protected/species/species-form/template.hbs b/app/pods/protected/species/species-form/template.hbs index f523d56..888b03e 100644 --- a/app/pods/protected/species/species-form/template.hbs +++ b/app/pods/protected/species/species-form/template.hbs @@ -19,7 +19,7 @@ {{#each strains as |strain index|}} {{if index ","}} {{#link-to 'protected.strains.show' strain.id}} - {{strain-name strain=strain}} + {{{strain.strainNameMU}}} {{/link-to}} {{/each}} {{add-button label="Add Strain" link="protected.strains.new" canAdd=metaData.canAdd}} diff --git a/app/pods/protected/strains/edit/controller.js b/app/pods/protected/strains/edit/controller.js index 509b1e7..4d68665 100644 --- a/app/pods/protected/strains/edit/controller.js +++ b/app/pods/protected/strains/edit/controller.js @@ -1,61 +1,36 @@ import Ember from 'ember'; +import SaveModel from '../../../../mixins/save-model'; +import ajaxError from '../../../../utils/ajax-error'; -const { Controller, RSVP, inject: { service } } = Ember; - -export default Controller.extend({ - ajaxError: service('ajax-error'), +const { Controller } = Ember; +export default Controller.extend(SaveModel, { + // Required for SaveModel mixin fallbackRouteSave: 'protected.strains.show', fallbackRouteCancel: 'protected.strains.show', actions: { - save: function(properties, deleteQueue, updateQueue) { - let promises = []; - properties.measurements.forEach((measurement) => { - if (measurement.get('isNew')) { - promises.push(measurement.save()); - } - }); - - updateQueue.forEach((measurement) => { - promises.push(measurement.save()); - }); - - deleteQueue.forEach((measurement) => { - promises.push(measurement.destroyRecord()); - }); - - const model = this.get('model'); - const fallbackRoute = this.get('fallbackRouteSave'); - - RSVP.all(promises).then(() => { - // Can't call _super inside promise, have to reproduce save-model - // mixin here :-( - model.setProperties(properties); - model.save().then((model) => { - this.get('flashMessages').clearMessages(); - this.transitionToRoute(fallbackRoute, model); - }); - }, (errors) => { - this.get('ajaxError').alert(errors); + addCharacteristic: function() { + return this.store.createRecord('measurement', { + characteristic: this.store.createRecord('characteristic', { sortOrder: -999 }), }); }, - cancel: function() { - const model = this.get('model'); + saveMeasurement: function(measurement, properties) { + measurement.setProperties(properties); + measurement.save().then(() => { + this.get('flashMessages').clearMessages(); + }, () => { + ajaxError(measurement.get('errors'), this.get('flashMessages')); + }); + }, - model.get('errors').clear(); - model.rollbackAttributes(); - - if (model.get('isNew')) { - this.transitionToRoute(this.get('fallbackRouteCancel')); - } else { - this.transitionToRoute(this.get('fallbackRouteCancel'), model); + deleteMeasurement: function(measurement) { + const characteristic = measurement.get('characteristic'); + if (characteristic.get('isNew')) { + characteristic.destroyRecord(); } - }, - - addMeasurement: function() { - return this.store.createRecord('measurement'); + measurement.destroyRecord(); }, }, diff --git a/app/pods/protected/strains/edit/template.hbs b/app/pods/protected/strains/edit/template.hbs index 334ad07..59d1633 100644 --- a/app/pods/protected/strains/edit/template.hbs +++ b/app/pods/protected/strains/edit/template.hbs @@ -2,8 +2,10 @@ protected/strains/strain-form strain=model speciesList=speciesList - add-measurement=(action "addMeasurement") + add-characteristic=(action "addCharacteristic") allCharacteristics=allCharacteristics + save-measurement=(action "saveMeasurement") + delete-measurement=(action "deleteMeasurement") on-save=(action "save") on-cancel=(action "cancel") }} diff --git a/app/pods/protected/strains/index/strain-table/component.js b/app/pods/protected/strains/index/strain-table/component.js index 1de7256..7b3b21c 100644 --- a/app/pods/protected/strains/index/strain-table/component.js +++ b/app/pods/protected/strains/index/strain-table/component.js @@ -6,7 +6,7 @@ const { Component, computed: { sort } } = Ember; export default Component.extend(SetupMetaData, { strains: null, - sortParams: ['sortOrder'], + sortParams: ['fullName'], sortedStrains: sort('strains', 'sortParams'), }); diff --git a/app/pods/protected/strains/index/strain-table/template.hbs b/app/pods/protected/strains/index/strain-table/template.hbs index afb8cf2..bb13d76 100644 --- a/app/pods/protected/strains/index/strain-table/template.hbs +++ b/app/pods/protected/strains/index/strain-table/template.hbs @@ -13,7 +13,7 @@ {{#each sortedStrains as |strain|}} diff --git a/app/pods/protected/strains/measurements-table-row/component.js b/app/pods/protected/strains/measurements-table-row/component.js index 6b67968..ad63dc9 100644 --- a/app/pods/protected/strains/measurements-table-row/component.js +++ b/app/pods/protected/strains/measurements-table-row/component.js @@ -10,8 +10,6 @@ export default Component.extend({ allCharacteristics: null, measurement: null, isDirty: null, - isNew: false, - isQueued: false, // Actions "save-measurement": null, @@ -24,23 +22,11 @@ export default Component.extend({ notes: null, resetOnInit: Ember.on('init', function() { - this._resetProperties(); - }), - - _resetProperties: function() { this.get('propertiesList').forEach((field) => { const valueInMeasurement = this.get('measurement').get(field); this.set(field, valueInMeasurement); }); - // Read-only attributes - this.set('isNew', this.get('measurement.isNew')); - if (this.get('isNew') && !this.get('isQueued')) { - this.set('isEditing', true); - } else { - this.set('isEditing', false); - } - this.set('isDirty', false); - }, + }), updateField: function(property, value) { this.set(property, value); @@ -54,22 +40,12 @@ export default Component.extend({ actions: { edit: function() { - this.set('isEditing', true); + this.toggleProperty('isEditing'); }, save: function() { this.attrs['save-measurement'](this.get('measurement'), this.getProperties(this.get('propertiesList'))); - this.set('isQueued', true); - this._resetProperties(); - }, - - cancel: function() { - if (this.get('isNew')) { - this.attrs['delete-measurement'](this.get('measurement')); - } else { - this._resetProperties(); - this.set('isEditing', false); - } + this.toggleProperty('isEditing'); }, delete: function() { diff --git a/app/pods/protected/strains/measurements-table-row/loading/template.hbs b/app/pods/protected/strains/measurements-table-row/loading/template.hbs deleted file mode 100644 index e5a3e05..0000000 --- a/app/pods/protected/strains/measurements-table-row/loading/template.hbs +++ /dev/null @@ -1 +0,0 @@ -{{loading-panel}} diff --git a/app/pods/protected/strains/measurements-table-row/template.hbs b/app/pods/protected/strains/measurements-table-row/template.hbs index 7a51e78..0dc03b7 100644 --- a/app/pods/protected/strains/measurements-table-row/template.hbs +++ b/app/pods/protected/strains/measurements-table-row/template.hbs @@ -1,7 +1,5 @@ {{#if isEditing}} - + {{#if canEdit}} {{/if}} diff --git a/app/pods/protected/strains/measurements-table/component.js b/app/pods/protected/strains/measurements-table/component.js index 87bf403..e4fd3a1 100644 --- a/app/pods/protected/strains/measurements-table/component.js +++ b/app/pods/protected/strains/measurements-table/component.js @@ -5,13 +5,13 @@ const { sort } = computed; export default Component.extend({ // Passed in - measurements: null, + strain: null, allCharacteristics: null, canEdit: false, canAdd: false, // Actions - "add-measurement": null, + "add-characteristic": null, "save-measurement": null, "delete-measurement": null, @@ -19,11 +19,15 @@ export default Component.extend({ sortParams: ['characteristic.characteristicTypeName', 'characteristic.sortOrder', 'characteristic.characteristicName'], sortAsc: true, paramsChanged: false, - sortedMeasurements: sort('measurements', 'sortParams'), + sortedMeasurements: sort('strain.measurements', 'sortParams'), + measurementsPresent: computed('strain.measurements', function() { + return this.get('strain.measurements.length') > 0; + }), actions: { - addMeasurement: function() { - return this.attrs['add-measurement'](); + addCharacteristic: function() { + const newChar = this.attrs['add-characteristic'](); + this.get('strain.measurements').addObject(newChar); }, changeSortParam: function(col) { diff --git a/app/pods/protected/strains/measurements-table/template.hbs b/app/pods/protected/strains/measurements-table/template.hbs index 9d648b4..9e22393 100644 --- a/app/pods/protected/strains/measurements-table/template.hbs +++ b/app/pods/protected/strains/measurements-table/template.hbs @@ -1,16 +1,17 @@ {{#if canAdd}}
    -

    {{/if}} -{{#if paramsChanged}} - -{{/if}} +{{#if measurementsPresent}} + {{#if paramsChanged}} + + {{/if}}
    StrainStrain Value Notes
    - {{#link-to 'protected.strains.show' measurement.strain.id classBinding="measurement.strain.typeStrain:type-strain"}} - {{measurement.strain.fullNameMU}} + {{#link-to 'protected.strains.show' row.strain.id}} + {{{row.strain.strainNameMU}}} {{/link-to}} - {{measurement.value}} + {{row.value}} - {{measurement.notes}} + {{row.notes}}
    - {{#unless index}} - {{#link-to 'protected.characteristics.show' col.id}} - {{col.characteristicName}} - {{/link-to}} - {{else}} - {{col}} - {{/unless}} - {{col}}
    - {{#link-to 'protected.strains.show' strain classBinding="strain.typeStrain:type-strain"}} + {{#link-to 'protected.strains.show' strain classBinding="data.typeStrain:type-strain"}} {{strain.fullNameMU}} {{/link-to}} - {{{characteristic.characteristicTypeName}}} - - + {{else}} + - {{#if isDirty}} - {{/if}}
    {{#if canEdit}} @@ -47,10 +48,9 @@ allCharacteristics=allCharacteristics canEdit=canEdit }} - {{else}} - - - {{/each}}
    No Measurements on Record
    +{{else}} +No measurements on record. +{{/if}} diff --git a/app/pods/protected/strains/show/route.js b/app/pods/protected/strains/show/route.js index 20008bb..ea320bd 100644 --- a/app/pods/protected/strains/show/route.js +++ b/app/pods/protected/strains/show/route.js @@ -4,7 +4,7 @@ const { Route } = Ember; export default Route.extend({ model: function(params) { - return this.store.findRecord('strain', params.strain_id, { reload: true }); + return this.store.findRecord('strain', params.strain_id); }, }); diff --git a/app/pods/protected/strains/show/strain-card/template.hbs b/app/pods/protected/strains/show/strain-card/template.hbs index 4629f23..995326a 100644 --- a/app/pods/protected/strains/show/strain-card/template.hbs +++ b/app/pods/protected/strains/show/strain-card/template.hbs @@ -1,7 +1,7 @@
    - {{strain-name strain=strain}} + {{strain.strainNameMU}} {{! ROW 1 }} @@ -10,7 +10,7 @@
    Species
    {{#link-to 'protected.species.show' strain.species.id}} - {{strain.species.speciesName}} + {{strain.species.speciesNameMU}} {{/link-to}}
    @@ -71,11 +71,11 @@ {{! ROW 5 }}
    -
    Characteristic Measurements
    +
    Characteristics
    {{ protected/strains/measurements-table - measurements=strain.measurements + strain=strain canEdit=false canAdd=false }} diff --git a/app/pods/protected/strains/strain-form/component.js b/app/pods/protected/strains/strain-form/component.js index 90407d5..420db5f 100644 --- a/app/pods/protected/strains/strain-form/component.js +++ b/app/pods/protected/strains/strain-form/component.js @@ -1,7 +1,7 @@ import Ember from 'ember'; import SetupMetaData from '../../../../mixins/setup-metadata'; -const { Component, computed: { sort } } = Ember; +const { Component } = Ember; export default Component.extend(SetupMetaData, { // Read-only attributes @@ -9,22 +9,18 @@ export default Component.extend(SetupMetaData, { isNew: null, isDirty: false, speciesList: null, - allCharacteristics: [], - updateQueue: [], - deleteQueue: [], + allCharacteristics: null, // Actions "on-save": null, "on-cancel": null, "on-update": null, - "add-measurements": null, - - // CPs - sortParams: ['sortOrder'], - sortedSpeciesList: sort('speciesList', 'sortParams'), + "add-characteristic": null, + "save-measurement": null, + "delete-measurement": null, // Property mapping - propertiesList: ['strainName', 'typeStrain', 'species', 'isolatedFrom', 'accessionNumbers', 'genbank', 'wholeGenomeSequence', 'notes', 'measurements'], + propertiesList: ['strainName', 'typeStrain', 'species', 'isolatedFrom', 'accessionNumbers', 'genbank', 'wholeGenomeSequence', 'notes'], strainName: null, typeStrain: null, species: null, @@ -33,55 +29,15 @@ export default Component.extend(SetupMetaData, { genbank: null, wholeGenomeSequence: null, notes: null, - measurements: [], - - // Dropdown menu - characteristics: [], - charSortParams: ['characteristicTypeName', 'sortOrder', 'characteristicName'], - sortedCharacteristics: sort('characteristics', 'charSortParams'), - setupCharacteristics: Ember.on('init', function() { - const tempArray = this._resetArray(this.get('allCharacteristics')); - this.set('characteristics', tempArray); - }), resetOnInit: Ember.on('init', function() { - this._resetProperties(); - }), - - _resetArray: function(arr) { - let tempArray = []; - arr.forEach((val) => { - if (!val.get('isNew')) { - tempArray.push(val); - } - }); - return tempArray; - }, - - _resetProperties: function() { - // Still some coupling going on here because of adding strain to measurement - this.get('measurements').forEach((val) => { - if (val.get('hasDirtyAttributes')) { - val.rollbackAttributes(); - } - if (val.get('isNew')) { - this.get('strain.measurements').removeObject(val); - } - }); this.get('propertiesList').forEach((field) => { const valueInStrain = this.get('strain').get(field); - if (field === 'measurements') { - const tempArray = this._resetArray(valueInStrain); - this.set(field, tempArray); - } else { - this.set(field, valueInStrain); - } + this.set(field, valueInStrain); }); - this.set('updateQueue', []); - this.set('deleteQueue', []); // Read-only attributes this.set('isNew', this.get('strain.isNew')); - }, + }), updateField: function(property, value) { this.set(property, value); @@ -95,32 +51,23 @@ export default Component.extend(SetupMetaData, { actions: { save: function() { - return this.attrs['on-save'](this.getProperties(this.get('propertiesList')), this.get('deleteQueue'), this.get('updateQueue')); + return this.attrs['on-save'](this.getProperties(this.get('propertiesList'))); }, cancel: function() { - this._resetProperties(); return this.attrs['on-cancel'](); }, - addMeasurement: function() { - const measurement = this.attrs['add-measurement'](); - this.get('measurements').pushObject(measurement); + addCharacteristic: function() { + return this.attrs['add-characteristic'](); }, saveMeasurement: function(measurement, properties) { - measurement.setProperties(properties); - measurement.set('strain', this.get('strain')); - if (!measurement.get('isNew')) { - this.get('updateQueue').pushObject(measurement); - } - this.set('isDirty', true); + return this.attrs['save-measurement'](measurement, properties); }, deleteMeasurement: function(measurement) { - this.get('deleteQueue').pushObject(measurement); - this.get('measurements').removeObject(measurement); - this.set('isDirty', true); + return this.attrs['delete-measurement'](measurement); }, strainNameDidChange: function(value) { @@ -153,7 +100,7 @@ export default Component.extend(SetupMetaData, { }, notesDidChange: function(value) { - this.updateField('notes', value); + this.updateField('strain.notes', value); }, }, }); diff --git a/app/pods/protected/strains/strain-form/template.hbs b/app/pods/protected/strains/strain-form/template.hbs index 99b729c..47c5112 100644 --- a/app/pods/protected/strains/strain-form/template.hbs +++ b/app/pods/protected/strains/strain-form/template.hbs @@ -15,13 +15,11 @@
    - {{ - x-select - options=sortedSpeciesList - nameAttr='speciesName' - selected=species.id - update=(action "speciesDidChange") - }} +
    @@ -30,7 +28,7 @@ {{text-editor value=isolatedFrom update=(action "isolatedFromDidChange")}}
    -
    +
    {{one-way-input type="text" class="accession-numbers" value=accessionNumbers update=(action "accessionNumbersNameDidChange")}} @@ -39,8 +37,6 @@ {{one-way-input type="text" class="genbank" value=genbank update=(action "genbankDidChange")}}
    -
    -
    {{one-way-input type="text" class="whole-genome-sequenc" value=wholeGenomeSequence update=(action "wholeGenomeSequenceDidChange")}} @@ -53,24 +49,18 @@
    - {{#if isNew}} -
    - Please save before adding measurements -
    - {{else}} -
    - {{ - protected/strains/measurements-table - measurements=measurements - add-measurement=(action "addMeasurement") - allCharacteristics=sortedCharacteristics - save-measurement=(action "saveMeasurement") - delete-measurement=(action "deleteMeasurement") - canEdit=strain.canEdit - canAdd=metaData.canAdd - }} -
    - {{/if}} +
    + {{ + protected/strains/measurements-table + strain=strain + add-characteristic=(action "addCharacteristic") + allCharacteristics=allCharacteristics + save-measurement=(action "saveMeasurement") + delete-measurement=(action "deleteMeasurement") + canEdit=strain.canEdit + canAdd=metaData.canAdd + }} +

    Cancel diff --git a/app/pods/protected/users/changepassword/controller.js b/app/pods/protected/users/changepassword/controller.js index ddfd685..9119f1a 100644 --- a/app/pods/protected/users/changepassword/controller.js +++ b/app/pods/protected/users/changepassword/controller.js @@ -5,23 +5,18 @@ const { Controller, inject: { service } } = Ember; export default Controller.extend({ session: service(), ajax: service(), - ajaxError: service('ajax-error'), currentUser: service('session-account'), actions: { save: function(password) { const id = this.get('currentUser.account.id'); const data = { id: id, password: password }; - this.get('ajax').post('/users/password', { data: data }).then(() => { - this.transitionToRoute('protected.users.show', id); - this.get('flashMessages').information('Your password has been changed.'); - }, (errors) => { - this.get('ajaxError').alert(errors); - }); + this.get('ajax').post('/users/password', { data: data }); + this.transitionToRoute('protected.users.show', id); + this.get('flashMessages').information('Your password has been changed.'); }, cancel: function() { - this.get('flashMessages').clearMessages(); this.transitionToRoute('protected.users.show', this.get('currentUser.account.id')); }, }, diff --git a/app/pods/protected/users/index/route.js b/app/pods/protected/users/index/route.js index d2c99e2..2752983 100644 --- a/app/pods/protected/users/index/route.js +++ b/app/pods/protected/users/index/route.js @@ -11,8 +11,6 @@ export default Route.extend({ if (!user.get('isAdmin')) { this.transitionTo('protected.index'); } - }, () => { - this.transitionTo('protected.index'); }); }, diff --git a/app/pods/protected/users/show/route.js b/app/pods/protected/users/show/route.js index 1097d58..798787d 100644 --- a/app/pods/protected/users/show/route.js +++ b/app/pods/protected/users/show/route.js @@ -15,13 +15,11 @@ export default Route.extend({ if (!user.get('isAdmin') && user.get('id') !== user_id) { this.transitionTo('protected.users.index'); } - }, () => { - this.transitionTo('protected.users.index'); }); }, model: function(params) { - return this.store.findRecord('user', params.user_id, { reload: true }); + return this.store.findRecord('user', params.user_id); }, }); diff --git a/app/serializers/application.js b/app/serializers/application.js index 4a316f0..d40a2bf 100644 --- a/app/serializers/application.js +++ b/app/serializers/application.js @@ -5,41 +5,24 @@ const { RESTSerializer } = DS; const { isNone } = Ember; export default RESTSerializer.extend({ - serializeBelongsTo: function(snapshot, json, relationship) { - const key = relationship.key; - if (this._canSerialize(key)) { - const belongsToId = snapshot.belongsTo(key, { id: true }); - let payloadKey = this._getMappedKey(key, snapshot.type); - if (payloadKey === key && this.keyForRelationship) { - payloadKey = this.keyForRelationship(key, "belongsTo", "serialize"); - } - if (isNone(belongsToId)) { - json[payloadKey] = null; - } else { - json[payloadKey] = +belongsToId; - } + isNewSerializerAPI: true, - if (relationship.options.polymorphic) { - this.serializePolymorphicType(snapshot, json, relationship); - } - } + serializeBelongsTo: function(snapshot, json, relationship) { + let key = relationship.key; + const belongsTo = snapshot.belongsTo(key); + key = this.keyForRelationship ? this.keyForRelationship(key, "belongsTo", "serialize") : key; + json[key] = isNone(belongsTo) ? belongsTo : +belongsTo.record.id; }, serializeHasMany: function(snapshot, json, relationship) { - const key = relationship.key; - if (this._shouldSerializeHasMany(snapshot, key, relationship)) { - const hasMany = snapshot.hasMany(key, { ids: true }); - if (hasMany !== undefined) { - let payloadKey = this._getMappedKey(key, snapshot.type); - if (payloadKey === key && this.keyForRelationship) { - payloadKey = this.keyForRelationship(key, "hasMany", "serialize"); - } - json[payloadKey] = []; - hasMany.forEach((item) => { - json[payloadKey].push(+item); - }); - } - } + let key = relationship.key; + const hasMany = snapshot.hasMany(key); + key = this.keyForRelationship ? this.keyForRelationship(key, "hasMany", "serialize") : key; + + json[key] = []; + hasMany.forEach((item) => { + json[key].push(+item.id); + }); }, }); diff --git a/app/services/ajax-error.js b/app/services/ajax-error.js deleted file mode 100644 index 6cfd29a..0000000 --- a/app/services/ajax-error.js +++ /dev/null @@ -1,19 +0,0 @@ -import Ember from 'ember'; - -const { Service, inject: { service } } = Ember; - -export default Service.extend({ - flashMessages: service(), - - alert: function(error) { - const flash = this.get('flashMessages'); - - flash.clearMessages(); - window.scrollTo(0,0); - error.errors.forEach((error) => { - console.error(error); - const source = error.source.pointer.split('/'); - flash.error(`${source[source.length-1].replace(/([A-Z])/g, ' $1').capitalize()} - ${error.detail}`); - }); - } -}); diff --git a/app/services/globals.js b/app/services/globals.js deleted file mode 100644 index 05fb525..0000000 --- a/app/services/globals.js +++ /dev/null @@ -1,9 +0,0 @@ -import Ember from 'ember'; -import config from '../config/environment'; - -const { Service } = Ember; - -export default Service.extend({ - genus: config.APP.genus, - apiURL: config.apiURL, -}); diff --git a/bower.json b/bower.json index ecb82fe..7b06dc4 100644 --- a/bower.json +++ b/bower.json @@ -2,25 +2,27 @@ "name": "hymenobacterdotinfo", "dependencies": { "jquery": "~2.1.1", - "ember": "~2.2.0", + "ember": "1.13.10", "ember-cli-shims": "0.0.6", "ember-cli-test-loader": "0.2.1", - "ember-data": "~2.2.1", + "ember-data": "1.13.15", "ember-load-initializers": "0.1.7", "ember-qunit": "0.4.16", "ember-qunit-notifications": "0.1.0", "ember-resolver": "~0.1.20", - "loader.js": "ember-cli/loader.js#3.4.0", + "loader.js": "ember-cli/loader.js#3.2.1", "qunit": "~1.20.0", "flakes": "~1.0.0", "moment": "~2.10.6", - "select2": "4.0.1-rc.1", + "select2": "3.5.2", "antiscroll": "git://github.com/azirbel/antiscroll.git#90391fb371c7be769bc32e7287c5271981428356", "jquery-mousewheel": "~3.1.4", "jquery-ui": "~1.11.4", "quill": "~0.19.14", "pretender": "~0.10.1", "lodash": "~3.7.0", - "Faker": "~3.0.0" + "Faker": "~3.0.0", + "selectize": "~0.12.1", + "jQuery UI Sortable": "jquery-ui-sortable#*" } } diff --git a/config/environment.js b/config/environment.js index e8cfd47..f163a3d 100644 --- a/config/environment.js +++ b/config/environment.js @@ -29,7 +29,7 @@ module.exports = function(environment) { 'script-src': "'self'", 'font-src': "'self'", 'connect-src': "'self'", - 'img-src': "'self' data:", + 'img-src': "'self'", 'style-src': "'self' 'unsafe-inline'", 'media-src': "'self'" } @@ -61,7 +61,7 @@ module.exports = function(environment) { } ENV.apiURL = apiURL; - ENV.contentSecurityPolicy['connect-src'] = "'self' " + apiURL; + ENV.contentSecurityPolicy['connect-src'] = `'self' ${apiURL}`; return ENV; }; diff --git a/ember-cli-build.js b/ember-cli-build.js index b595f9e..6716197 100644 --- a/ember-cli-build.js +++ b/ember-cli-build.js @@ -14,8 +14,8 @@ module.exports = function(defaults) { // quill app.import('bower_components/quill/dist/quill.base.css'); app.import('bower_components/quill/dist/quill.snow.css'); - // select2 - app.import('bower_components/select2/dist/css/select2.min.css'); + // selectize + app.import('bower_components/selectize/dist/css/selectize.default.css'); // LIBS //////////////////////////////////////////////////////////////////////// // flakes (and deps) @@ -27,8 +27,10 @@ module.exports = function(defaults) { app.import('bower_components/moment/moment.js'); // quill app.import('bower_components/quill/dist/quill.min.js'); - // select2 - app.import('bower_components/select2/dist/js/select2.full.min.js'); + // jquery ui sortable + app.import('bower_components/jQuery UI Sortable/jquery-ui-sortable.min.js'); + // selectize + app.import('bower_components/selectize/dist/js/standalone/selectize.min.js'); return app.toTree(); }; diff --git a/package-lock.json b/package-lock.json deleted file mode 100644 index 73da753..0000000 --- a/package-lock.json +++ /dev/null @@ -1,13051 +0,0 @@ -{ - 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"string_decoder": "^1.1.1", - "util-deprecate": "^1.0.1" - } - } - } - } - } -} diff --git a/package.json b/package.json index 6941668..45d3b65 100644 --- a/package.json +++ b/package.json @@ -10,11 +10,7 @@ "scripts": { "build": "ember build", "start": "ember server", - "test": "ember test", - "bower": "bower", - "ember": "ember", - "firebase": "firebase", - "deployProd": "firebase deploy -e prod" + "test": "ember test" }, "repository": "", "engines": { @@ -24,7 +20,7 @@ "license": "MIT", "devDependencies": { "broccoli-asset-rev": "^2.2.0", - "ember-cli": "1.13.13", + "ember-cli": "1.13.11", "ember-cli-app-version": "^1.0.0", "ember-cli-babel": "^5.1.5", "ember-cli-content-security-policy": "0.4.0", @@ -37,16 +33,13 @@ "ember-cli-mirage": "0.1.11", "ember-cli-qunit": "^1.0.4", "ember-cli-release": "0.2.8", - "ember-cli-sri": "^1.2.0", + "ember-cli-sri": "^1.1.0", "ember-cli-uglify": "^1.2.0", - "ember-data": "~2.2.1", + "ember-data": "1.13.15", "ember-disable-proxy-controllers": "^1.0.1", "ember-export-application-global": "^1.0.4", "ember-one-way-input": "0.1.3", - "ember-simple-auth": "1.0.1" - }, - "dependencies": { - "bower": "^1.8.8", - "firebase-tools": "^7.12.1" + "ember-select-2": "1.3.0", + "ember-simple-auth": "1.0.0" } } diff --git a/tests/acceptance/characteristics-test.js b/tests/acceptance/characteristics-test.js index b8a2edd..ad62807 100644 --- a/tests/acceptance/characteristics-test.js +++ b/tests/acceptance/characteristics-test.js @@ -6,10 +6,10 @@ import { authenticateSession } from '../helpers/ember-simple-auth'; module('Acceptance | characteristics', { beforeEach: function() { this.application = startApp(); - server.create('users', { role: 'A', canEdit: true, sub: 1 }); authenticateSession(this.application, { access_token: "eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJpc3MiOiJiYWN0ZGIiLCJzdWIiOiIxIiwiZXhwIjoxNDQ2NTAyMjI2LCJpYXQiOjE0NDY0OTg2MjZ9.vIjKHAsp2TkCV505EbtCo2xQT-2oQkB-Nv5y0b6E7Mg" }); + server.create('users', { role: 'A', canEdit: true }); }, afterEach: function() { @@ -70,22 +70,3 @@ test('creating /characteristics/new', function(assert) { }); }); }); - -test('deleting /characteristics/:id', function(assert) { - const characteristic = server.create('characteristics', { 'canEdit': true }); - visit(`/characteristics/${characteristic.id}`); - - andThen(function() { - assert.equal(currentURL(), `/characteristics/${characteristic.id}`); - click('button.delete'); - - andThen(function() { - click('button.delete-confirm'); - - andThen(function() { - assert.equal(currentURL(), `/characteristics`); - assert.equal(server.db.characteristics.length, 0); - }); - }); - }); -}); diff --git a/tests/acceptance/species-test.js b/tests/acceptance/species-test.js index a137276..1b4fe85 100644 --- a/tests/acceptance/species-test.js +++ b/tests/acceptance/species-test.js @@ -6,10 +6,10 @@ import { authenticateSession } from '../helpers/ember-simple-auth'; module('Acceptance | species', { beforeEach: function() { this.application = startApp(); - server.create('users', { role: 'A', canEdit: true, sub: 1 }); authenticateSession(this.application, { access_token: "eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJpc3MiOiJiYWN0ZGIiLCJzdWIiOiIxIiwiZXhwIjoxNDQ2NTAyMjI2LCJpYXQiOjE0NDY0OTg2MjZ9.vIjKHAsp2TkCV505EbtCo2xQT-2oQkB-Nv5y0b6E7Mg" }); + server.create('users', { role: 'A', canEdit: true }); }, afterEach: function() { @@ -69,22 +69,3 @@ test('creating /species/new', function(assert) { }); }); }); - -test('deleting /species/:id', function(assert) { - const species = server.create('species', { 'canEdit': true }); - visit(`/species/${species.id}`); - - andThen(function() { - assert.equal(currentURL(), `/species/${species.id}`); - click('button.delete'); - - andThen(function() { - click('button.delete-confirm'); - - andThen(function() { - assert.equal(currentURL(), `/species`); - assert.equal(server.db.species.length, 0); - }); - }); - }); -}); diff --git a/tests/acceptance/strains-test.js b/tests/acceptance/strains-test.js index 405960a..a52e7ed 100644 --- a/tests/acceptance/strains-test.js +++ b/tests/acceptance/strains-test.js @@ -6,10 +6,10 @@ import { authenticateSession } from '../helpers/ember-simple-auth'; module('Acceptance | strains', { beforeEach: function() { this.application = startApp(); - server.create('users', { role: 'A', canEdit: true, sub: 1 }); authenticateSession(this.application, { access_token: "eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJpc3MiOiJiYWN0ZGIiLCJzdWIiOiIxIiwiZXhwIjoxNDQ2NTAyMjI2LCJpYXQiOjE0NDY0OTg2MjZ9.vIjKHAsp2TkCV505EbtCo2xQT-2oQkB-Nv5y0b6E7Mg" }); + server.create('users', { role: 'A', canEdit: true }); }, afterEach: function() { @@ -74,23 +74,3 @@ test('creating /strains/new', function(assert) { }); }); }); - -test('deleting /strains/:id', function(assert) { - const species = server.create('species'); - const strain = server.create('strains', { canEdit: true , species: species.id }); - visit(`/strains/${strain.id}`); - - andThen(function() { - assert.equal(currentURL(), `/strains/${strain.id}`); - click('button.delete'); - - andThen(function() { - click('button.delete-confirm'); - - andThen(function() { - assert.equal(currentURL(), `/strains`); - assert.equal(server.db.strains.length, 0); - }); - }); - }); -}); diff --git a/tests/acceptance/users-test.js b/tests/acceptance/users-test.js index 2fe4d4d..ed08d72 100644 --- a/tests/acceptance/users-test.js +++ b/tests/acceptance/users-test.js @@ -6,10 +6,10 @@ import { invalidateSession, authenticateSession } from '../helpers/ember-simple- module('Acceptance | users', { beforeEach: function() { this.application = startApp(); - server.create('users', { role: 'A', canEdit: true, sub: 1 }); authenticateSession(this.application, { access_token: "eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJpc3MiOiJiYWN0ZGIiLCJzdWIiOiIxIiwiZXhwIjoxNDQ2NTAyMjI2LCJpYXQiOjE0NDY0OTg2MjZ9.vIjKHAsp2TkCV505EbtCo2xQT-2oQkB-Nv5y0b6E7Mg" }); + server.create('users', { role: 'A', canEdit: true }); }, afterEach: function() { diff --git a/tests/unit/initializers/global-variables-test.js b/tests/unit/initializers/global-variables-test.js new file mode 100644 index 0000000..e2aaa52 --- /dev/null +++ b/tests/unit/initializers/global-variables-test.js @@ -0,0 +1,23 @@ +import Ember from 'ember'; +import { initialize } from '../../../initializers/global-variables'; +import { module, test } from 'qunit'; + +var container, application; + +module('Unit | Initializer | global variables', { + beforeEach: function() { + Ember.run(function() { + application = Ember.Application.create(); + container = application.__container__; + application.deferReadiness(); + }); + } +}); + +// Replace this with your real tests. +test('it works', function(assert) { + initialize(container, application); + + // you would normally confirm the results of the initializer here + assert.ok(true); +});