diff --git a/.gitignore b/.gitignore index 581ad43..08e02d8 100644 --- a/.gitignore +++ b/.gitignore @@ -15,4 +15,4 @@ /libpeerconnection.log npm-debug.log testem.log -.divshot-cache \ No newline at end of file +.firebase diff --git a/app/pods/application/adapter.js b/app/adapters/application.js similarity index 86% rename from app/pods/application/adapter.js rename to app/adapters/application.js index 0d7ed91..aa4cbcf 100644 --- a/app/pods/application/adapter.js +++ b/app/adapters/application.js @@ -1,9 +1,13 @@ import DS from 'ember-data'; import DataAdapterMixin from 'ember-simple-auth/mixins/data-adapter-mixin'; +import Ember from 'ember'; +const { inject: { service } } = Ember; const { RESTAdapter } = DS; export default RESTAdapter.extend(DataAdapterMixin, { + globals: service(), + authorizer: 'authorizer:application', namespace: function() { diff --git a/app/adapters/user.js b/app/adapters/user.js new file mode 100644 index 0000000..689a6ec --- /dev/null +++ b/app/adapters/user.js @@ -0,0 +1,7 @@ +import ApplicationAdapter from '../adapters/application'; + +export default ApplicationAdapter.extend({ + // If coalesceFindRequests is on, and we 403 on any requests, ESA logs + // the current user out. Better to split the requests up at the adapter level. + coalesceFindRequests: false, +}); diff --git a/app/authenticators/oauth2.js b/app/authenticators/oauth2.js index c5c9221..7662be1 100644 --- a/app/authenticators/oauth2.js +++ b/app/authenticators/oauth2.js @@ -1,6 +1,70 @@ import OAuth2PasswordGrant from 'ember-simple-auth/authenticators/oauth2-password-grant'; import config from '../config/environment'; +import parseBase64 from '../utils/parse-base64'; +import Ember from 'ember'; +const { RSVP: { Promise }, isEmpty, run, Logger: { warn } } = Ember; export default OAuth2PasswordGrant.extend({ serverTokenEndpoint: `${config.apiURL}/api/authenticate`, + serverTokenRefreshEndpoint: `${config.apiURL}/api/refresh`, + + authenticate: function(identification, password) { + return new Promise((resolve, reject) => { + const data = { username: identification, password }; + const serverTokenEndpoint = this.get('serverTokenEndpoint'); + this.makeRequest(serverTokenEndpoint, data).then((response) => { + run(() => { + const token = parseBase64(response['access_token']); + const expiresAt = this._absolutizeExpirationTime(token['exp']); + this._scheduleAccessTokenRefresh(expiresAt, response['access_token']); + if (!isEmpty(expiresAt)) { + response = Ember.merge(response, { 'expires_at': expiresAt }); + } + resolve(response); + }); + }, (xhr) => { + run(null, reject, xhr.responseJSON || xhr.responseText); + }); + }); + }, + + _scheduleAccessTokenRefresh: function(expiresAt, accessToken) { + if (this.get('refreshAccessTokens')) { + const now = (new Date()).getTime(); + const offset = (Math.floor(Math.random() * 5) + 5) * 1000; + if (!isEmpty(accessToken) && !isEmpty(expiresAt) && expiresAt > now - offset) { + run.cancel(this._refreshTokenTimeout); + delete this._refreshTokenTimeout; + if (!Ember.testing) { + this._refreshTokenTimeout = run.later(this, this._refreshAccessToken, expiresAt, accessToken, expiresAt - now - offset); + } + } + } + }, + + _refreshAccessToken: function(expiresAt, accessToken) { + const data = { 'token': accessToken }; + const serverTokenRefreshEndpoint = this.get('serverTokenRefreshEndpoint'); + return new Promise((resolve, reject) => { + this.makeRequest(serverTokenRefreshEndpoint, data).then((response) => { + run(() => { + const token = parseBase64(response['access_token']); + const expiresAt = this._absolutizeExpirationTime(token['exp']); + const data = Ember.merge(response, { 'expires_at': expiresAt }); + this._scheduleAccessTokenRefresh(expiresAt, response['access_token']); + this.trigger('sessionDataUpdated', data); + resolve(data); + }); + }, (xhr, status, error) => { + warn(`Access token could not be refreshed - server responded with ${error}.`); + reject(); + }); + }); + }, + + _absolutizeExpirationTime: function(expiresAt) { + if (!isEmpty(expiresAt)) { + return new Date(expiresAt * 1000).getTime(); + } + } }); diff --git a/app/helpers/get-property.js b/app/helpers/get-property.js index 9801d7b..4ba442b 100644 --- a/app/helpers/get-property.js +++ b/app/helpers/get-property.js @@ -2,7 +2,6 @@ import Ember from 'ember'; const { get, Helper: { helper } } = Ember; -// This will be unneccesary when ember 2.0 lands export default helper(function(params) { return get(params[0], params[1]); }); diff --git a/app/initializers/global-variables.js b/app/initializers/global-variables.js deleted file mode 100644 index 554e6d8..0000000 --- a/app/initializers/global-variables.js +++ /dev/null @@ -1,20 +0,0 @@ -import Ember from 'ember'; -import config from '../config/environment'; - -var globals = Ember.Object.extend({ - genus: config.APP.genus, - apiURL: config.apiURL, -}); - -export function initialize(container, application) { - application.register('service:globals', globals, {singleton: true}); - application.inject('route', 'globals', 'service:globals'); - application.inject('controller', 'globals', 'service:globals'); - application.inject('component', 'globals', 'service:globals'); - application.inject('adapter', 'globals', 'service:globals'); -} - -export default { - name: 'global-variables', - initialize: initialize -}; diff --git a/app/mirage/config.js b/app/mirage/config.js index 935eb17..418da09 100644 --- a/app/mirage/config.js +++ b/app/mirage/config.js @@ -19,11 +19,13 @@ export function testConfig() { this.post('/species'); this.get('/species/:id'); this.put('/species/:id'); + this.delete('/species/:id'); this.get('/characteristics'); this.post('/characteristics'); this.get('/characteristics/:id'); this.put('/characteristics/:id'); + this.delete('/characteristics/:id'); this.get('/strains', function(db /*, request*/) { return { @@ -39,4 +41,5 @@ export function testConfig() { }; }); this.put('/strains/:id'); + this.delete('/strains/:id'); } diff --git a/app/mixins/delete-model.js b/app/mixins/delete-model.js index e16fb76..9e113a0 100644 --- a/app/mixins/delete-model.js +++ b/app/mixins/delete-model.js @@ -8,6 +8,10 @@ export default Mixin.create({ actions: { delete: function() { this.get('model').destroyRecord().then(() => { + // Instead of unloading the entire store, we keep the loaded user models + ['species', 'strain', 'characteristic', 'measurement'].map((model) => { + this.get('store').unloadAll(model); + }); this.transitionToRoute(this.get('transitionRoute')); }); }, diff --git a/app/mixins/save-model.js b/app/mixins/save-model.js index d4459e3..2b652ff 100644 --- a/app/mixins/save-model.js +++ b/app/mixins/save-model.js @@ -23,11 +23,16 @@ export default Mixin.create({ cancel: function() { const model = this.get('model'); + const isNew = model.get('isNew'); model.get('errors').clear(); model.rollbackAttributes(); - this.transitionToRoute(this.get('fallbackRouteCancel'), model); + if (isNew) { + this.transitionToRoute(this.get('fallbackRouteCancel')); + } else { + this.transitionToRoute(this.get('fallbackRouteCancel'), model); + } }, }, }); diff --git a/app/models/species.js b/app/models/species.js index 7581d10..362462b 100644 --- a/app/models/species.js +++ b/app/models/species.js @@ -1,6 +1,5 @@ import DS from 'ember-data'; import config from '../config/environment'; -import Ember from 'ember'; const { Model, attr, hasMany } = DS; @@ -17,9 +16,4 @@ export default Model.extend({ updatedBy : attr('number'), sortOrder : attr('number'), canEdit : attr('boolean'), - - // TODO: move this to component/helper - speciesNameMU: function() { - return Ember.String.htmlSafe(`${this.get('speciesName')}`); - }.property('speciesName').readOnly(), }); diff --git a/app/models/strain.js b/app/models/strain.js index b202a78..04489a0 100644 --- a/app/models/strain.js +++ b/app/models/strain.js @@ -2,6 +2,7 @@ import DS from 'ember-data'; import Ember from 'ember'; const { Model, hasMany, belongsTo, attr } = DS; +const { computed, String: { htmlSafe } } = Ember; export default Model.extend({ measurements : hasMany('measurements', { async: false }), @@ -22,19 +23,8 @@ export default Model.extend({ sortOrder : attr('number'), canEdit : attr('boolean'), - // TODO: move this to component/helper - strainNameMU: function() { - let type = this.get('typeStrain') ? 'T' : ''; - return Ember.String.htmlSafe(`${this.get('strainName')}${type}`); - }.property('strainName', 'typeStrain').readOnly(), - - // TODO: move this to component/helper - fullName: Ember.computed('species', 'strainName', function() { - return `${this.get('species.speciesName')} ${this.get('strainNameMU')}`; + fullNameMU: computed('species', 'strainName', function() { + const type = this.get('typeStrain') ? 'T' : ''; + return htmlSafe(`${this.get('species.speciesName')} ${this.get('strainName')}${type}`); }), - - // TODO: move this to component/helper - fullNameMU: function() { - return Ember.String.htmlSafe(`${this.get('species.speciesName')} ${this.get('strainNameMU')}`); - }.property('species', 'strainNameMU').readOnly(), }); diff --git a/app/pods/components/delete-button/component.js b/app/pods/components/delete-button/component.js index 2ceca5b..77fc1d0 100644 --- a/app/pods/components/delete-button/component.js +++ b/app/pods/components/delete-button/component.js @@ -1,13 +1,23 @@ import Ember from 'ember'; -export default Ember.Component.extend({ - tagName: 'button', - classNames: ["button-red", "smaller"], +const { Component } = Ember; - click: function() { - if (window.confirm("Do you really want to delete this?")) { +export default Component.extend({ + tagName: 'span', + showConfirmDelete: false, + + actions: { + initialClick: function() { + this.set('showConfirmDelete', true); + }, + + cancelDelete: function() { + this.set('showConfirmDelete', false); + }, + + confirmDelete: function() { this.attrs.delete(); - } + }, }, }); diff --git a/app/pods/components/delete-button/template.hbs b/app/pods/components/delete-button/template.hbs index 4b2e04f..0fd90d7 100644 --- a/app/pods/components/delete-button/template.hbs +++ b/app/pods/components/delete-button/template.hbs @@ -1 +1,12 @@ -Delete +{{#unless showConfirmDelete}} + +{{else}} + + +{{/unless}} diff --git a/app/pods/components/genus-name/component.js b/app/pods/components/genus-name/component.js index ce66e93..23cb0a1 100644 --- a/app/pods/components/genus-name/component.js +++ b/app/pods/components/genus-name/component.js @@ -1,8 +1,14 @@ import Ember from 'ember'; -export default Ember.Component.extend({ +const { Component, computed, inject: { service } } = Ember; + +export default Component.extend({ + globals: service(), + tagName: 'em', - genus: function() { + + genus: computed('globals.genus', function() { return this.get('globals.genus').capitalize(); - }.property().readOnly(), + }), + }); diff --git a/app/pods/components/site-logo/component.js b/app/pods/components/site-logo/component.js index 6e705e6..2e79985 100644 --- a/app/pods/components/site-logo/component.js +++ b/app/pods/components/site-logo/component.js @@ -1,3 +1,7 @@ import Ember from 'ember'; -export default Ember.Component.extend({}); +const { Component, inject: { service } } = Ember; + +export default Component.extend({ + globals: service(), +}); diff --git a/app/pods/components/strain-name/template.hbs b/app/pods/components/strain-name/template.hbs new file mode 100644 index 0000000..38822c5 --- /dev/null +++ b/app/pods/components/strain-name/template.hbs @@ -0,0 +1 @@ +{{strain.strainName}}{{{if strain.typeStrain 'T' ''}}} diff --git a/app/pods/components/text-editor/component.js b/app/pods/components/text-editor/component.js index 01d00fd..5fca82d 100644 --- a/app/pods/components/text-editor/component.js +++ b/app/pods/components/text-editor/component.js @@ -1,13 +1,25 @@ import Ember from 'ember'; /* global Quill */ -export default Ember.Component.extend({ - quill: null, +const { Component } = Ember; + +export default Component.extend({ + // Passed in value: null, - update: null, + + // Internal + quill: null, + + didReceiveAttrs() { + this._super(...arguments); + + if (!this.attrs.update) { + throw new Error(`You must provide an \`update\` action.`); + } + }, didInsertElement: function() { - let quill = new Quill(`#${this.get('elementId')} .editor`, { + const quill = new Quill(`#${this.get('elementId')} .editor`, { formats: ['bold', 'italic', 'underline'], modules: { 'toolbar': { container: `#${this.get('elementId')} .toolbar` } diff --git a/app/pods/components/x-application/component.js b/app/pods/components/x-application/component.js index 967b497..edb934e 100644 --- a/app/pods/components/x-application/component.js +++ b/app/pods/components/x-application/component.js @@ -1,10 +1,12 @@ import Ember from 'ember'; -export default Ember.Component.extend({ +const { Component, inject: { service } } = Ember; + +export default Component.extend({ classNames: ["flakes-frame"], - session: Ember.inject.service('session'), - currentUser: Ember.inject.service('session-account'), + session: service(), + currentUser: service('session-account'), didInsertElement: function() { FlakesFrame.init(); diff --git a/app/pods/components/x-application/template.hbs b/app/pods/components/x-application/template.hbs index 49cc38e..386353d 100644 --- a/app/pods/components/x-application/template.hbs +++ b/app/pods/components/x-application/template.hbs @@ -33,7 +33,7 @@
{{link-to 'Sign Up' 'users.new'}}
- {{link-to 'Locked Out?' 'users.requestlockouthelp'}} + {{link-to 'Reset Password' 'users.requestlockouthelp'}}

{{/if}} diff --git a/app/pods/components/x-select/component.js b/app/pods/components/x-select/component.js index 129b943..681597b 100644 --- a/app/pods/components/x-select/component.js +++ b/app/pods/components/x-select/component.js @@ -1,50 +1,54 @@ import Ember from 'ember'; -const { Component, isEmpty } = Ember; +const { Component, get, run: { schedule } } = Ember; export default Component.extend({ tagName: 'select', - - nameAttr: null, - listItems: null, - placeholder: null, - selected: null, - selectize: null, - multiple: false, - attributeBindings: [ 'multiple', ], + options: null, + selected: null, + nameAttr: null, + placeholder: null, + change: function() { - this.attrs["update"](this.$()[0].selectize.getValue()); - }, + let selectedInComponent = this.get('selected'); + let selectedInWidget = this.$().val(); - didReceiveAttrs: function() { - this._super(...arguments); - console.log('didReceiveAttrs'); - - if (!this.attrs.update) { - throw new Error(`You must provide an \`update\` action.`); + if (this.get('multiple')) { + if (selectedInWidget === null) { + selectedInWidget = []; + } + selectedInComponent = selectedInComponent.toString(); + selectedInWidget = selectedInWidget.toString(); } - Ember.run.schedule('actions', this, () => { - console.log('before adding'); - this.$()[0].selectize.setValue(this.get('selected'), true); - console.log('after adding') - }); + // We need this to prevent an infinite loop of afterRender -> change. + if (selectedInComponent !== selectedInWidget) { + this.attrs.update(this.$().val()); + } }, didInsertElement: function() { - console.log('didInsertElement'); - const options = { - closeAfterSelect: true, - selectOnTab: true, - plugins: ['drag_drop'], - items: this.get('selected'), - } + let options = {}; + options.placeholder = this.get('placeholder'); + options.templateResult = function(item) { + if (!item.disabled) { + const text = get(item, 'element.innerHTML'); + const $item = Ember.$(`${text}`); + return $item; + } + }; + this.$().select2(options); + }, - this.$().selectize(options); + didRender: function() { + const selected = this.get('selected'); + schedule('afterRender', this, function() { + this.$().val(selected).trigger('change'); + }); }, }); diff --git a/app/pods/components/x-select/template.hbs b/app/pods/components/x-select/template.hbs index 093ed1e..131449b 100644 --- a/app/pods/components/x-select/template.hbs +++ b/app/pods/components/x-select/template.hbs @@ -1,6 +1,3 @@ -{{#if placeholder}} - -{{/if}} -{{#each listItems as |option|}} - +{{#each options as |option|}} + {{/each}} diff --git a/app/pods/login/login-form/template.hbs b/app/pods/login/login-form/template.hbs index 45afb9b..52773ca 100644 --- a/app/pods/login/login-form/template.hbs +++ b/app/pods/login/login-form/template.hbs @@ -10,3 +10,7 @@
{{link-to 'Forget your password?' 'users.requestlockouthelp'}}
+
+
+ Just checking things out? Log in with email read-only and password bacteria! +
diff --git a/app/pods/protected/characteristics/show/characteristic-card/template.hbs b/app/pods/protected/characteristics/show/characteristic-card/template.hbs index e404106..a7520fd 100644 --- a/app/pods/protected/characteristics/show/characteristic-card/template.hbs +++ b/app/pods/protected/characteristics/show/characteristic-card/template.hbs @@ -26,7 +26,6 @@
Measurements
-

To add/edit/remove a measurement, please visit the strain's page (links below)

{{protected/characteristics/show/measurements-table characteristic=characteristic}}
diff --git a/app/pods/protected/characteristics/show/measurements-table/component.js b/app/pods/protected/characteristics/show/measurements-table/component.js index 96b79fc..e1d47d2 100644 --- a/app/pods/protected/characteristics/show/measurements-table/component.js +++ b/app/pods/protected/characteristics/show/measurements-table/component.js @@ -1,7 +1,7 @@ import Ember from 'ember'; const { Component, computed } = Ember; -const { sort } = computed; +const { alias, sort } = computed; export default Component.extend({ characteristic: null, @@ -10,10 +10,9 @@ export default Component.extend({ return this.get('characteristic.measurements.length') > 0; }), - sortParams: ['characteristic.characteristicTypeName', 'characteristic.sortOrder', 'characteristic.characteristicName'], - sortAsc: true, - paramsChanged: false, - sortedMeasurements: sort('characteristic.measurements', 'sortParams'), + measurements: alias('characteristic.measurements'), + sortParams: ['strain.sortOrder'], + sortedMeasurements: sort('measurements', 'sortParams'), actions: { changeSortParam: function(col) { diff --git a/app/pods/protected/characteristics/show/measurements-table/template.hbs b/app/pods/protected/characteristics/show/measurements-table/template.hbs index 8ee1a86..74ce23b 100644 --- a/app/pods/protected/characteristics/show/measurements-table/template.hbs +++ b/app/pods/protected/characteristics/show/measurements-table/template.hbs @@ -7,24 +7,24 @@ - + - {{#each sortedMeasurements as |row|}} + {{#each sortedMeasurements as |measurement|}} {{/each}} diff --git a/app/pods/protected/characteristics/show/route.js b/app/pods/protected/characteristics/show/route.js index 0f50705..d6394ce 100644 --- a/app/pods/protected/characteristics/show/route.js +++ b/app/pods/protected/characteristics/show/route.js @@ -4,7 +4,7 @@ const { Route } = Ember; export default Route.extend({ model: function(params) { - return this.store.findRecord('characteristic', params.characteristic_id); + return this.store.findRecord('characteristic', params.characteristic_id, { reload: true }); }, }); diff --git a/app/pods/protected/compare/controller.js b/app/pods/protected/compare/controller.js index 7e0d72d..378407e 100644 --- a/app/pods/protected/compare/controller.js +++ b/app/pods/protected/compare/controller.js @@ -3,8 +3,8 @@ import Ember from 'ember'; const { Controller } = Ember; export default Controller.extend({ - selectedStrains: null, - selectedCharacteristics: null, + selectedStrains: [], + selectedCharacteristics: [], actions: { search: function(query) { @@ -12,12 +12,10 @@ export default Controller.extend({ }, updateStrainSelection: function(selection) { - console.log(selection); this.set('selectedStrains', selection); }, updateCharacteristicSelection: function(selection) { - console.log(selection); this.set('selectedCharacteristics', selection); }, } diff --git a/app/pods/protected/compare/results/results-table/component.js b/app/pods/protected/compare/results/results-table/component.js index 87b2369..1fa35ac 100644 --- a/app/pods/protected/compare/results/results-table/component.js +++ b/app/pods/protected/compare/results/results-table/component.js @@ -4,6 +4,7 @@ const { Component, computed, inject: { service } } = Ember; export default Component.extend({ session: service(), + globals: service(), strains: null, characteristics: null, diff --git a/app/pods/protected/compare/results/results-table/template.hbs b/app/pods/protected/compare/results/results-table/template.hbs index c90d3bc..3ecfe46 100644 --- a/app/pods/protected/compare/results/results-table/template.hbs +++ b/app/pods/protected/compare/results/results-table/template.hbs @@ -14,8 +14,16 @@ {{#each characteristics as |row|}} - {{#each row key="@index" as |col|}} - + {{#each row key="@index" as |col index|}} + {{/each}} {{/each}} diff --git a/app/pods/protected/compare/results/route.js b/app/pods/protected/compare/results/route.js index 72c01f2..6085d85 100644 --- a/app/pods/protected/compare/results/route.js +++ b/app/pods/protected/compare/results/route.js @@ -30,16 +30,15 @@ export default Route.extend({ } const compare = this.controllerFor('protected.compare'); - compare.set('selectedStrains', params.strain_ids.split(',')); - compare.set('selectedCharacteristics', params.characteristic_ids.split(',')); + compare.set('selectedStrains', params.strain_ids.split(",")); + compare.set('selectedCharacteristics', params.characteristic_ids.split(",")); return this.get('ajax').request('/compare', { data: params }); }, setupController: function(controller, model) { model.forEach((m, i) => { - const c = this.store.peekRecord('characteristic', m[0]); - model[i][0] = c.get('characteristicName'); + model[i][0] = this.store.peekRecord('characteristic', m[0]); }); const compare = this.controllerFor('protected.compare'); diff --git a/app/pods/protected/compare/select-form/component.js b/app/pods/protected/compare/select-form/component.js index 8c90170..692be67 100644 --- a/app/pods/protected/compare/select-form/component.js +++ b/app/pods/protected/compare/select-form/component.js @@ -1,6 +1,6 @@ import Ember from 'ember'; -const { Component } = Ember; +const { Component, computed: { sort } } = Ember; export default Component.extend({ characteristics: null, @@ -10,12 +10,23 @@ export default Component.extend({ "update-strains": null, "update-characteristics": null, + + charSortParams: ['characteristicTypeName', 'sortOrder', 'characteristicName'], + sortedCharacteristics: sort('characteristics', 'charSortParams'), + strainSortParams: ['sortOrder'], + sortedStrains: sort('strains', 'sortParams'), + + selectedStrains: [], + selectedCharacteristics: [], + updateStrains: function(selection) { - this.attrs["update-strains"](selection); + this.set('selectedStrains', selection); + this.attrs['update-strains'](this.get('selectedStrains')); }, updateCharacteristics: function(selection) { - this.attrs['update-characteristics'](selection); + this.set('selectedCharacteristics', selection); + this.attrs['update-characteristics'](this.get('selectedCharacteristics')); }, actions: { @@ -57,7 +68,7 @@ export default Component.extend({ this.updateStrains(selection); }, - updateCharacteristicSelection: function(selection) { + updateCharacteristicsSelection: function(selection) { this.updateCharacteristics(selection); }, }, diff --git a/app/pods/protected/compare/select-form/template.hbs b/app/pods/protected/compare/select-form/template.hbs index 6bf7985..331535d 100644 --- a/app/pods/protected/compare/select-form/template.hbs +++ b/app/pods/protected/compare/select-form/template.hbs @@ -6,12 +6,12 @@ {{ x-select - listItems=strains - nameAttr="fullNameMU" - update=(action "updateStrainSelection") - placeholder="Select one ore more strains" + options=sortedStrains + nameAttr='fullNameMU' multiple=true selected=selectedStrains + update=(action "updateStrainSelection") + placeholder="Select one or more strains" }}
  • @@ -26,12 +26,12 @@ {{ x-select - listItems=characteristics - nameAttr="characteristicName" - update=(action "updateCharacteristicSelection") - placeholder="Select one ore more characteristics" + options=sortedCharacteristics + nameAttr='characteristicName' multiple=true selected=selectedCharacteristics + update=(action "updateCharacteristicsSelection") + placeholder="Select one or more characteristics" }}
  • diff --git a/app/pods/protected/species/index/species-table/component.js b/app/pods/protected/species/index/species-table/component.js index 528c48d..53e46a1 100644 --- a/app/pods/protected/species/index/species-table/component.js +++ b/app/pods/protected/species/index/species-table/component.js @@ -6,7 +6,7 @@ const { Component, computed: { sort } } = Ember; export default Component.extend(SetupMetaData, { species: null, - sortParams: ['speciesName', 'strainCount'], + sortParams: ['sortOrder'], sortedSpecies: sort('species', 'sortParams'), }); diff --git a/app/pods/protected/species/index/species-table/template.hbs b/app/pods/protected/species/index/species-table/template.hbs index f96f9cf..ab9d772 100644 --- a/app/pods/protected/species/index/species-table/template.hbs +++ b/app/pods/protected/species/index/species-table/template.hbs @@ -23,7 +23,7 @@ {{#each species.strains as |strain index|}} {{if index ","}} {{#link-to 'protected.strains.show' strain.id}} - {{{strain.strainNameMU}}} + {{strain-name strain=strain}} {{/link-to}} {{/each}} diff --git a/app/pods/protected/species/show/route.js b/app/pods/protected/species/show/route.js index c99362f..ac07e8f 100644 --- a/app/pods/protected/species/show/route.js +++ b/app/pods/protected/species/show/route.js @@ -4,7 +4,7 @@ const { Route } = Ember; export default Route.extend({ model: function(params) { - return this.store.findRecord('species', params.species_id); + return this.store.findRecord('species', params.species_id, { reload: true }); }, }); diff --git a/app/pods/protected/species/show/species-card/template.hbs b/app/pods/protected/species/show/species-card/template.hbs index fac8247..b4e753d 100644 --- a/app/pods/protected/species/show/species-card/template.hbs +++ b/app/pods/protected/species/show/species-card/template.hbs @@ -14,7 +14,7 @@ {{#each species.strains as |strain index|}}
  • {{#link-to 'protected.strains.show' strain.id}} - {{{strain.strainNameMU}}} + {{strain-name strain=strain}} {{/link-to}}
    • {{/each}} diff --git a/app/pods/protected/species/species-form/template.hbs b/app/pods/protected/species/species-form/template.hbs index 888b03e..f523d56 100644 --- a/app/pods/protected/species/species-form/template.hbs +++ b/app/pods/protected/species/species-form/template.hbs @@ -19,7 +19,7 @@ {{#each strains as |strain index|}} {{if index ","}} {{#link-to 'protected.strains.show' strain.id}} - {{{strain.strainNameMU}}} + {{strain-name strain=strain}} {{/link-to}} {{/each}} {{add-button label="Add Strain" link="protected.strains.new" canAdd=metaData.canAdd}} diff --git a/app/pods/protected/strains/edit/controller.js b/app/pods/protected/strains/edit/controller.js index 4d68665..509b1e7 100644 --- a/app/pods/protected/strains/edit/controller.js +++ b/app/pods/protected/strains/edit/controller.js @@ -1,36 +1,61 @@ import Ember from 'ember'; -import SaveModel from '../../../../mixins/save-model'; -import ajaxError from '../../../../utils/ajax-error'; -const { Controller } = Ember; +const { Controller, RSVP, inject: { service } } = Ember; + +export default Controller.extend({ + ajaxError: service('ajax-error'), -export default Controller.extend(SaveModel, { - // Required for SaveModel mixin fallbackRouteSave: 'protected.strains.show', fallbackRouteCancel: 'protected.strains.show', actions: { - addCharacteristic: function() { - return this.store.createRecord('measurement', { - characteristic: this.store.createRecord('characteristic', { sortOrder: -999 }), + save: function(properties, deleteQueue, updateQueue) { + let promises = []; + properties.measurements.forEach((measurement) => { + if (measurement.get('isNew')) { + promises.push(measurement.save()); + } + }); + + updateQueue.forEach((measurement) => { + promises.push(measurement.save()); + }); + + deleteQueue.forEach((measurement) => { + promises.push(measurement.destroyRecord()); + }); + + const model = this.get('model'); + const fallbackRoute = this.get('fallbackRouteSave'); + + RSVP.all(promises).then(() => { + // Can't call _super inside promise, have to reproduce save-model + // mixin here :-( + model.setProperties(properties); + model.save().then((model) => { + this.get('flashMessages').clearMessages(); + this.transitionToRoute(fallbackRoute, model); + }); + }, (errors) => { + this.get('ajaxError').alert(errors); }); }, - saveMeasurement: function(measurement, properties) { - measurement.setProperties(properties); - measurement.save().then(() => { - this.get('flashMessages').clearMessages(); - }, () => { - ajaxError(measurement.get('errors'), this.get('flashMessages')); - }); - }, + cancel: function() { + const model = this.get('model'); - deleteMeasurement: function(measurement) { - const characteristic = measurement.get('characteristic'); - if (characteristic.get('isNew')) { - characteristic.destroyRecord(); + model.get('errors').clear(); + model.rollbackAttributes(); + + if (model.get('isNew')) { + this.transitionToRoute(this.get('fallbackRouteCancel')); + } else { + this.transitionToRoute(this.get('fallbackRouteCancel'), model); } - measurement.destroyRecord(); + }, + + addMeasurement: function() { + return this.store.createRecord('measurement'); }, }, diff --git a/app/pods/protected/strains/edit/template.hbs b/app/pods/protected/strains/edit/template.hbs index 59d1633..334ad07 100644 --- a/app/pods/protected/strains/edit/template.hbs +++ b/app/pods/protected/strains/edit/template.hbs @@ -2,10 +2,8 @@ protected/strains/strain-form strain=model speciesList=speciesList - add-characteristic=(action "addCharacteristic") + add-measurement=(action "addMeasurement") allCharacteristics=allCharacteristics - save-measurement=(action "saveMeasurement") - delete-measurement=(action "deleteMeasurement") on-save=(action "save") on-cancel=(action "cancel") }} diff --git a/app/pods/protected/strains/index/strain-table/component.js b/app/pods/protected/strains/index/strain-table/component.js index 7b3b21c..1de7256 100644 --- a/app/pods/protected/strains/index/strain-table/component.js +++ b/app/pods/protected/strains/index/strain-table/component.js @@ -6,7 +6,7 @@ const { Component, computed: { sort } } = Ember; export default Component.extend(SetupMetaData, { strains: null, - sortParams: ['fullName'], + sortParams: ['sortOrder'], sortedStrains: sort('strains', 'sortParams'), }); diff --git a/app/pods/protected/strains/index/strain-table/template.hbs b/app/pods/protected/strains/index/strain-table/template.hbs index bb13d76..afb8cf2 100644 --- a/app/pods/protected/strains/index/strain-table/template.hbs +++ b/app/pods/protected/strains/index/strain-table/template.hbs @@ -13,7 +13,7 @@ {{#each sortedStrains as |strain|}} diff --git a/app/pods/protected/strains/measurements-table-row/component.js b/app/pods/protected/strains/measurements-table-row/component.js index ad63dc9..6b67968 100644 --- a/app/pods/protected/strains/measurements-table-row/component.js +++ b/app/pods/protected/strains/measurements-table-row/component.js @@ -10,6 +10,8 @@ export default Component.extend({ allCharacteristics: null, measurement: null, isDirty: null, + isNew: false, + isQueued: false, // Actions "save-measurement": null, @@ -22,11 +24,23 @@ export default Component.extend({ notes: null, resetOnInit: Ember.on('init', function() { + this._resetProperties(); + }), + + _resetProperties: function() { this.get('propertiesList').forEach((field) => { const valueInMeasurement = this.get('measurement').get(field); this.set(field, valueInMeasurement); }); - }), + // Read-only attributes + this.set('isNew', this.get('measurement.isNew')); + if (this.get('isNew') && !this.get('isQueued')) { + this.set('isEditing', true); + } else { + this.set('isEditing', false); + } + this.set('isDirty', false); + }, updateField: function(property, value) { this.set(property, value); @@ -40,12 +54,22 @@ export default Component.extend({ actions: { edit: function() { - this.toggleProperty('isEditing'); + this.set('isEditing', true); }, save: function() { this.attrs['save-measurement'](this.get('measurement'), this.getProperties(this.get('propertiesList'))); - this.toggleProperty('isEditing'); + this.set('isQueued', true); + this._resetProperties(); + }, + + cancel: function() { + if (this.get('isNew')) { + this.attrs['delete-measurement'](this.get('measurement')); + } else { + this._resetProperties(); + this.set('isEditing', false); + } }, delete: function() { diff --git a/app/pods/protected/strains/measurements-table-row/loading/template.hbs b/app/pods/protected/strains/measurements-table-row/loading/template.hbs new file mode 100644 index 0000000..e5a3e05 --- /dev/null +++ b/app/pods/protected/strains/measurements-table-row/loading/template.hbs @@ -0,0 +1 @@ +{{loading-panel}} diff --git a/app/pods/protected/strains/measurements-table-row/template.hbs b/app/pods/protected/strains/measurements-table-row/template.hbs index 0dc03b7..7a51e78 100644 --- a/app/pods/protected/strains/measurements-table-row/template.hbs +++ b/app/pods/protected/strains/measurements-table-row/template.hbs @@ -1,5 +1,7 @@ {{#if isEditing}} - + {{#if canEdit}} {{/if}} diff --git a/app/pods/protected/strains/measurements-table/component.js b/app/pods/protected/strains/measurements-table/component.js index e4fd3a1..87bf403 100644 --- a/app/pods/protected/strains/measurements-table/component.js +++ b/app/pods/protected/strains/measurements-table/component.js @@ -5,13 +5,13 @@ const { sort } = computed; export default Component.extend({ // Passed in - strain: null, + measurements: null, allCharacteristics: null, canEdit: false, canAdd: false, // Actions - "add-characteristic": null, + "add-measurement": null, "save-measurement": null, "delete-measurement": null, @@ -19,15 +19,11 @@ export default Component.extend({ sortParams: ['characteristic.characteristicTypeName', 'characteristic.sortOrder', 'characteristic.characteristicName'], sortAsc: true, paramsChanged: false, - sortedMeasurements: sort('strain.measurements', 'sortParams'), - measurementsPresent: computed('strain.measurements', function() { - return this.get('strain.measurements.length') > 0; - }), + sortedMeasurements: sort('measurements', 'sortParams'), actions: { - addCharacteristic: function() { - const newChar = this.attrs['add-characteristic'](); - this.get('strain.measurements').addObject(newChar); + addMeasurement: function() { + return this.attrs['add-measurement'](); }, changeSortParam: function(col) { diff --git a/app/pods/protected/strains/measurements-table/template.hbs b/app/pods/protected/strains/measurements-table/template.hbs index 9e22393..9d648b4 100644 --- a/app/pods/protected/strains/measurements-table/template.hbs +++ b/app/pods/protected/strains/measurements-table/template.hbs @@ -1,17 +1,16 @@ {{#if canAdd}}
    -

    {{/if}} -{{#if measurementsPresent}} - {{#if paramsChanged}} - - {{/if}} +{{#if paramsChanged}} + +{{/if}}
    StrainStrain Value Notes
    - {{#link-to 'protected.strains.show' row.strain.id}} - {{{row.strain.strainNameMU}}} + {{#link-to 'protected.strains.show' measurement.strain.id classBinding="measurement.strain.typeStrain:type-strain"}} + {{measurement.strain.fullNameMU}} {{/link-to}} - {{row.value}} + {{measurement.value}} - {{row.notes}} + {{measurement.notes}}
    {{col}} + {{#unless index}} + {{#link-to 'protected.characteristics.show' col.id}} + {{col.characteristicName}} + {{/link-to}} + {{else}} + {{col}} + {{/unless}} +
    - {{#link-to 'protected.strains.show' strain classBinding="data.typeStrain:type-strain"}} + {{#link-to 'protected.strains.show' strain classBinding="strain.typeStrain:type-strain"}} {{strain.fullNameMU}} {{/link-to}} + {{{characteristic.characteristicTypeName}}} + - {{#if isDirty}} - - {{else}} - + {{#if isDirty}} + {{/if}}
    {{#if canEdit}} @@ -48,9 +47,10 @@ allCharacteristics=allCharacteristics canEdit=canEdit }} + {{else}} + + + {{/each}}
    No Measurements on Record
    -{{else}} -No measurements on record. -{{/if}} diff --git a/app/pods/protected/strains/show/route.js b/app/pods/protected/strains/show/route.js index ea320bd..20008bb 100644 --- a/app/pods/protected/strains/show/route.js +++ b/app/pods/protected/strains/show/route.js @@ -4,7 +4,7 @@ const { Route } = Ember; export default Route.extend({ model: function(params) { - return this.store.findRecord('strain', params.strain_id); + return this.store.findRecord('strain', params.strain_id, { reload: true }); }, }); diff --git a/app/pods/protected/strains/show/strain-card/template.hbs b/app/pods/protected/strains/show/strain-card/template.hbs index 995326a..4629f23 100644 --- a/app/pods/protected/strains/show/strain-card/template.hbs +++ b/app/pods/protected/strains/show/strain-card/template.hbs @@ -1,7 +1,7 @@
    - {{strain.strainNameMU}} + {{strain-name strain=strain}} {{! ROW 1 }} @@ -10,7 +10,7 @@
    Species
    {{#link-to 'protected.species.show' strain.species.id}} - {{strain.species.speciesNameMU}} + {{strain.species.speciesName}} {{/link-to}}
    @@ -71,11 +71,11 @@ {{! ROW 5 }}
    -
    Characteristics
    +
    Characteristic Measurements
    {{ protected/strains/measurements-table - strain=strain + measurements=strain.measurements canEdit=false canAdd=false }} diff --git a/app/pods/protected/strains/strain-form/component.js b/app/pods/protected/strains/strain-form/component.js index 420db5f..90407d5 100644 --- a/app/pods/protected/strains/strain-form/component.js +++ b/app/pods/protected/strains/strain-form/component.js @@ -1,7 +1,7 @@ import Ember from 'ember'; import SetupMetaData from '../../../../mixins/setup-metadata'; -const { Component } = Ember; +const { Component, computed: { sort } } = Ember; export default Component.extend(SetupMetaData, { // Read-only attributes @@ -9,18 +9,22 @@ export default Component.extend(SetupMetaData, { isNew: null, isDirty: false, speciesList: null, - allCharacteristics: null, + allCharacteristics: [], + updateQueue: [], + deleteQueue: [], // Actions "on-save": null, "on-cancel": null, "on-update": null, - "add-characteristic": null, - "save-measurement": null, - "delete-measurement": null, + "add-measurements": null, + + // CPs + sortParams: ['sortOrder'], + sortedSpeciesList: sort('speciesList', 'sortParams'), // Property mapping - propertiesList: ['strainName', 'typeStrain', 'species', 'isolatedFrom', 'accessionNumbers', 'genbank', 'wholeGenomeSequence', 'notes'], + propertiesList: ['strainName', 'typeStrain', 'species', 'isolatedFrom', 'accessionNumbers', 'genbank', 'wholeGenomeSequence', 'notes', 'measurements'], strainName: null, typeStrain: null, species: null, @@ -29,15 +33,55 @@ export default Component.extend(SetupMetaData, { genbank: null, wholeGenomeSequence: null, notes: null, + measurements: [], + + // Dropdown menu + characteristics: [], + charSortParams: ['characteristicTypeName', 'sortOrder', 'characteristicName'], + sortedCharacteristics: sort('characteristics', 'charSortParams'), + setupCharacteristics: Ember.on('init', function() { + const tempArray = this._resetArray(this.get('allCharacteristics')); + this.set('characteristics', tempArray); + }), resetOnInit: Ember.on('init', function() { + this._resetProperties(); + }), + + _resetArray: function(arr) { + let tempArray = []; + arr.forEach((val) => { + if (!val.get('isNew')) { + tempArray.push(val); + } + }); + return tempArray; + }, + + _resetProperties: function() { + // Still some coupling going on here because of adding strain to measurement + this.get('measurements').forEach((val) => { + if (val.get('hasDirtyAttributes')) { + val.rollbackAttributes(); + } + if (val.get('isNew')) { + this.get('strain.measurements').removeObject(val); + } + }); this.get('propertiesList').forEach((field) => { const valueInStrain = this.get('strain').get(field); - this.set(field, valueInStrain); + if (field === 'measurements') { + const tempArray = this._resetArray(valueInStrain); + this.set(field, tempArray); + } else { + this.set(field, valueInStrain); + } }); + this.set('updateQueue', []); + this.set('deleteQueue', []); // Read-only attributes this.set('isNew', this.get('strain.isNew')); - }), + }, updateField: function(property, value) { this.set(property, value); @@ -51,23 +95,32 @@ export default Component.extend(SetupMetaData, { actions: { save: function() { - return this.attrs['on-save'](this.getProperties(this.get('propertiesList'))); + return this.attrs['on-save'](this.getProperties(this.get('propertiesList')), this.get('deleteQueue'), this.get('updateQueue')); }, cancel: function() { + this._resetProperties(); return this.attrs['on-cancel'](); }, - addCharacteristic: function() { - return this.attrs['add-characteristic'](); + addMeasurement: function() { + const measurement = this.attrs['add-measurement'](); + this.get('measurements').pushObject(measurement); }, saveMeasurement: function(measurement, properties) { - return this.attrs['save-measurement'](measurement, properties); + measurement.setProperties(properties); + measurement.set('strain', this.get('strain')); + if (!measurement.get('isNew')) { + this.get('updateQueue').pushObject(measurement); + } + this.set('isDirty', true); }, deleteMeasurement: function(measurement) { - return this.attrs['delete-measurement'](measurement); + this.get('deleteQueue').pushObject(measurement); + this.get('measurements').removeObject(measurement); + this.set('isDirty', true); }, strainNameDidChange: function(value) { @@ -100,7 +153,7 @@ export default Component.extend(SetupMetaData, { }, notesDidChange: function(value) { - this.updateField('strain.notes', value); + this.updateField('notes', value); }, }, }); diff --git a/app/pods/protected/strains/strain-form/template.hbs b/app/pods/protected/strains/strain-form/template.hbs index 47c5112..99b729c 100644 --- a/app/pods/protected/strains/strain-form/template.hbs +++ b/app/pods/protected/strains/strain-form/template.hbs @@ -15,11 +15,13 @@
    - + {{ + x-select + options=sortedSpeciesList + nameAttr='speciesName' + selected=species.id + update=(action "speciesDidChange") + }}
    @@ -28,7 +30,7 @@ {{text-editor value=isolatedFrom update=(action "isolatedFromDidChange")}}
    -
    +
    {{one-way-input type="text" class="accession-numbers" value=accessionNumbers update=(action "accessionNumbersNameDidChange")}} @@ -37,6 +39,8 @@ {{one-way-input type="text" class="genbank" value=genbank update=(action "genbankDidChange")}}
    +
    +
    {{one-way-input type="text" class="whole-genome-sequenc" value=wholeGenomeSequence update=(action "wholeGenomeSequenceDidChange")}} @@ -49,18 +53,24 @@
    -
    - {{ - protected/strains/measurements-table - strain=strain - add-characteristic=(action "addCharacteristic") - allCharacteristics=allCharacteristics - save-measurement=(action "saveMeasurement") - delete-measurement=(action "deleteMeasurement") - canEdit=strain.canEdit - canAdd=metaData.canAdd - }} -
    + {{#if isNew}} +
    + Please save before adding measurements +
    + {{else}} +
    + {{ + protected/strains/measurements-table + measurements=measurements + add-measurement=(action "addMeasurement") + allCharacteristics=sortedCharacteristics + save-measurement=(action "saveMeasurement") + delete-measurement=(action "deleteMeasurement") + canEdit=strain.canEdit + canAdd=metaData.canAdd + }} +
    + {{/if}}
    Cancel diff --git a/app/pods/protected/users/changepassword/controller.js b/app/pods/protected/users/changepassword/controller.js index 9119f1a..ddfd685 100644 --- a/app/pods/protected/users/changepassword/controller.js +++ b/app/pods/protected/users/changepassword/controller.js @@ -5,18 +5,23 @@ const { Controller, inject: { service } } = Ember; export default Controller.extend({ session: service(), ajax: service(), + ajaxError: service('ajax-error'), currentUser: service('session-account'), actions: { save: function(password) { const id = this.get('currentUser.account.id'); const data = { id: id, password: password }; - this.get('ajax').post('/users/password', { data: data }); - this.transitionToRoute('protected.users.show', id); - this.get('flashMessages').information('Your password has been changed.'); + this.get('ajax').post('/users/password', { data: data }).then(() => { + this.transitionToRoute('protected.users.show', id); + this.get('flashMessages').information('Your password has been changed.'); + }, (errors) => { + this.get('ajaxError').alert(errors); + }); }, cancel: function() { + this.get('flashMessages').clearMessages(); this.transitionToRoute('protected.users.show', this.get('currentUser.account.id')); }, }, diff --git a/app/pods/protected/users/index/route.js b/app/pods/protected/users/index/route.js index 2752983..d2c99e2 100644 --- a/app/pods/protected/users/index/route.js +++ b/app/pods/protected/users/index/route.js @@ -11,6 +11,8 @@ export default Route.extend({ if (!user.get('isAdmin')) { this.transitionTo('protected.index'); } + }, () => { + this.transitionTo('protected.index'); }); }, diff --git a/app/pods/protected/users/show/route.js b/app/pods/protected/users/show/route.js index 798787d..1097d58 100644 --- a/app/pods/protected/users/show/route.js +++ b/app/pods/protected/users/show/route.js @@ -15,11 +15,13 @@ export default Route.extend({ if (!user.get('isAdmin') && user.get('id') !== user_id) { this.transitionTo('protected.users.index'); } + }, () => { + this.transitionTo('protected.users.index'); }); }, model: function(params) { - return this.store.findRecord('user', params.user_id); + return this.store.findRecord('user', params.user_id, { reload: true }); }, }); diff --git a/app/serializers/application.js b/app/serializers/application.js index d40a2bf..4a316f0 100644 --- a/app/serializers/application.js +++ b/app/serializers/application.js @@ -5,24 +5,41 @@ const { RESTSerializer } = DS; const { isNone } = Ember; export default RESTSerializer.extend({ - isNewSerializerAPI: true, - serializeBelongsTo: function(snapshot, json, relationship) { - let key = relationship.key; - const belongsTo = snapshot.belongsTo(key); - key = this.keyForRelationship ? this.keyForRelationship(key, "belongsTo", "serialize") : key; - json[key] = isNone(belongsTo) ? belongsTo : +belongsTo.record.id; + const key = relationship.key; + if (this._canSerialize(key)) { + const belongsToId = snapshot.belongsTo(key, { id: true }); + let payloadKey = this._getMappedKey(key, snapshot.type); + if (payloadKey === key && this.keyForRelationship) { + payloadKey = this.keyForRelationship(key, "belongsTo", "serialize"); + } + if (isNone(belongsToId)) { + json[payloadKey] = null; + } else { + json[payloadKey] = +belongsToId; + } + + if (relationship.options.polymorphic) { + this.serializePolymorphicType(snapshot, json, relationship); + } + } }, serializeHasMany: function(snapshot, json, relationship) { - let key = relationship.key; - const hasMany = snapshot.hasMany(key); - key = this.keyForRelationship ? this.keyForRelationship(key, "hasMany", "serialize") : key; - - json[key] = []; - hasMany.forEach((item) => { - json[key].push(+item.id); - }); + const key = relationship.key; + if (this._shouldSerializeHasMany(snapshot, key, relationship)) { + const hasMany = snapshot.hasMany(key, { ids: true }); + if (hasMany !== undefined) { + let payloadKey = this._getMappedKey(key, snapshot.type); + if (payloadKey === key && this.keyForRelationship) { + payloadKey = this.keyForRelationship(key, "hasMany", "serialize"); + } + json[payloadKey] = []; + hasMany.forEach((item) => { + json[payloadKey].push(+item); + }); + } + } }, }); diff --git a/app/services/ajax-error.js b/app/services/ajax-error.js new file mode 100644 index 0000000..6cfd29a --- /dev/null +++ b/app/services/ajax-error.js @@ -0,0 +1,19 @@ +import Ember from 'ember'; + +const { Service, inject: { service } } = Ember; + +export default Service.extend({ + flashMessages: service(), + + alert: function(error) { + const flash = this.get('flashMessages'); + + flash.clearMessages(); + window.scrollTo(0,0); + error.errors.forEach((error) => { + console.error(error); + const source = error.source.pointer.split('/'); + flash.error(`${source[source.length-1].replace(/([A-Z])/g, ' $1').capitalize()} - ${error.detail}`); + }); + } +}); diff --git a/app/services/globals.js b/app/services/globals.js new file mode 100644 index 0000000..05fb525 --- /dev/null +++ b/app/services/globals.js @@ -0,0 +1,9 @@ +import Ember from 'ember'; +import config from '../config/environment'; + +const { Service } = Ember; + +export default Service.extend({ + genus: config.APP.genus, + apiURL: config.apiURL, +}); diff --git a/bower.json b/bower.json index 7b06dc4..ecb82fe 100644 --- a/bower.json +++ b/bower.json @@ -2,27 +2,25 @@ "name": "hymenobacterdotinfo", "dependencies": { "jquery": "~2.1.1", - "ember": "1.13.10", + "ember": "~2.2.0", "ember-cli-shims": "0.0.6", "ember-cli-test-loader": "0.2.1", - "ember-data": "1.13.15", + "ember-data": "~2.2.1", "ember-load-initializers": "0.1.7", "ember-qunit": "0.4.16", "ember-qunit-notifications": "0.1.0", "ember-resolver": "~0.1.20", - "loader.js": "ember-cli/loader.js#3.2.1", + "loader.js": "ember-cli/loader.js#3.4.0", "qunit": "~1.20.0", "flakes": "~1.0.0", "moment": "~2.10.6", - "select2": "3.5.2", + "select2": "4.0.1-rc.1", "antiscroll": "git://github.com/azirbel/antiscroll.git#90391fb371c7be769bc32e7287c5271981428356", "jquery-mousewheel": "~3.1.4", "jquery-ui": "~1.11.4", "quill": "~0.19.14", "pretender": "~0.10.1", "lodash": "~3.7.0", - "Faker": "~3.0.0", - "selectize": "~0.12.1", - "jQuery UI Sortable": "jquery-ui-sortable#*" + "Faker": "~3.0.0" } } diff --git a/config/environment.js b/config/environment.js index f163a3d..e8cfd47 100644 --- a/config/environment.js +++ b/config/environment.js @@ -29,7 +29,7 @@ module.exports = function(environment) { 'script-src': "'self'", 'font-src': "'self'", 'connect-src': "'self'", - 'img-src': "'self'", + 'img-src': "'self' data:", 'style-src': "'self' 'unsafe-inline'", 'media-src': "'self'" } @@ -61,7 +61,7 @@ module.exports = function(environment) { } ENV.apiURL = apiURL; - ENV.contentSecurityPolicy['connect-src'] = `'self' ${apiURL}`; + ENV.contentSecurityPolicy['connect-src'] = "'self' " + apiURL; return ENV; }; diff --git a/ember-cli-build.js b/ember-cli-build.js index 6716197..b595f9e 100644 --- a/ember-cli-build.js +++ b/ember-cli-build.js @@ -14,8 +14,8 @@ module.exports = function(defaults) { // quill app.import('bower_components/quill/dist/quill.base.css'); app.import('bower_components/quill/dist/quill.snow.css'); - // selectize - app.import('bower_components/selectize/dist/css/selectize.default.css'); + // select2 + app.import('bower_components/select2/dist/css/select2.min.css'); // LIBS //////////////////////////////////////////////////////////////////////// // flakes (and deps) @@ -27,10 +27,8 @@ module.exports = function(defaults) { app.import('bower_components/moment/moment.js'); // quill app.import('bower_components/quill/dist/quill.min.js'); - // jquery ui sortable - app.import('bower_components/jQuery UI Sortable/jquery-ui-sortable.min.js'); - // selectize - app.import('bower_components/selectize/dist/js/standalone/selectize.min.js'); + // select2 + app.import('bower_components/select2/dist/js/select2.full.min.js'); return app.toTree(); 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"https://registry.npmjs.org/readable-stream/-/readable-stream-3.5.0.tgz", + "integrity": "sha512-gSz026xs2LfxBPudDuI41V1lka8cxg64E66SGe78zJlsUofOg/yqwezdIcdfwik6B4h8LFmWPA9ef9X3FiNFLA==", + "requires": { + "inherits": "^2.0.3", + "string_decoder": "^1.1.1", + "util-deprecate": "^1.0.1" + } + } + } + } + } +} diff --git a/package.json b/package.json index 45d3b65..6941668 100644 --- a/package.json +++ b/package.json @@ -10,7 +10,11 @@ "scripts": { "build": "ember build", "start": "ember server", - "test": "ember test" + "test": "ember test", + "bower": "bower", + "ember": "ember", + "firebase": "firebase", + "deployProd": "firebase deploy -e prod" }, "repository": "", "engines": { @@ -20,7 +24,7 @@ "license": "MIT", "devDependencies": { "broccoli-asset-rev": "^2.2.0", - "ember-cli": "1.13.11", + "ember-cli": "1.13.13", "ember-cli-app-version": "^1.0.0", "ember-cli-babel": "^5.1.5", "ember-cli-content-security-policy": "0.4.0", @@ -33,13 +37,16 @@ "ember-cli-mirage": "0.1.11", "ember-cli-qunit": "^1.0.4", "ember-cli-release": "0.2.8", - "ember-cli-sri": "^1.1.0", + "ember-cli-sri": "^1.2.0", "ember-cli-uglify": "^1.2.0", - "ember-data": "1.13.15", + "ember-data": "~2.2.1", "ember-disable-proxy-controllers": "^1.0.1", "ember-export-application-global": "^1.0.4", "ember-one-way-input": "0.1.3", - "ember-select-2": "1.3.0", - "ember-simple-auth": "1.0.0" + "ember-simple-auth": "1.0.1" + }, + "dependencies": { + "bower": "^1.8.8", + "firebase-tools": "^7.12.1" } } diff --git a/tests/acceptance/characteristics-test.js b/tests/acceptance/characteristics-test.js index ad62807..b8a2edd 100644 --- a/tests/acceptance/characteristics-test.js +++ b/tests/acceptance/characteristics-test.js @@ -6,10 +6,10 @@ import { authenticateSession } from '../helpers/ember-simple-auth'; module('Acceptance | characteristics', { beforeEach: function() { this.application = startApp(); + server.create('users', { role: 'A', canEdit: true, sub: 1 }); authenticateSession(this.application, { access_token: "eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJpc3MiOiJiYWN0ZGIiLCJzdWIiOiIxIiwiZXhwIjoxNDQ2NTAyMjI2LCJpYXQiOjE0NDY0OTg2MjZ9.vIjKHAsp2TkCV505EbtCo2xQT-2oQkB-Nv5y0b6E7Mg" }); - server.create('users', { role: 'A', canEdit: true }); }, afterEach: function() { @@ -70,3 +70,22 @@ test('creating /characteristics/new', function(assert) { }); }); }); + +test('deleting /characteristics/:id', function(assert) { + const characteristic = server.create('characteristics', { 'canEdit': true }); + visit(`/characteristics/${characteristic.id}`); + + andThen(function() { + assert.equal(currentURL(), `/characteristics/${characteristic.id}`); + click('button.delete'); + + andThen(function() { + click('button.delete-confirm'); + + andThen(function() { + assert.equal(currentURL(), `/characteristics`); + assert.equal(server.db.characteristics.length, 0); + }); + }); + }); +}); diff --git a/tests/acceptance/species-test.js b/tests/acceptance/species-test.js index 1b4fe85..a137276 100644 --- a/tests/acceptance/species-test.js +++ b/tests/acceptance/species-test.js @@ -6,10 +6,10 @@ import { authenticateSession } from '../helpers/ember-simple-auth'; module('Acceptance | species', { beforeEach: function() { this.application = startApp(); + server.create('users', { role: 'A', canEdit: true, sub: 1 }); authenticateSession(this.application, { access_token: "eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJpc3MiOiJiYWN0ZGIiLCJzdWIiOiIxIiwiZXhwIjoxNDQ2NTAyMjI2LCJpYXQiOjE0NDY0OTg2MjZ9.vIjKHAsp2TkCV505EbtCo2xQT-2oQkB-Nv5y0b6E7Mg" }); - server.create('users', { role: 'A', canEdit: true }); }, afterEach: function() { @@ -69,3 +69,22 @@ test('creating /species/new', function(assert) { }); }); }); + +test('deleting /species/:id', function(assert) { + const species = server.create('species', { 'canEdit': true }); + visit(`/species/${species.id}`); + + andThen(function() { + assert.equal(currentURL(), `/species/${species.id}`); + click('button.delete'); + + andThen(function() { + click('button.delete-confirm'); + + andThen(function() { + assert.equal(currentURL(), `/species`); + assert.equal(server.db.species.length, 0); + }); + }); + }); +}); diff --git a/tests/acceptance/strains-test.js b/tests/acceptance/strains-test.js index a52e7ed..405960a 100644 --- a/tests/acceptance/strains-test.js +++ b/tests/acceptance/strains-test.js @@ -6,10 +6,10 @@ import { authenticateSession } from '../helpers/ember-simple-auth'; module('Acceptance | strains', { beforeEach: function() { this.application = startApp(); + server.create('users', { role: 'A', canEdit: true, sub: 1 }); authenticateSession(this.application, { access_token: "eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJpc3MiOiJiYWN0ZGIiLCJzdWIiOiIxIiwiZXhwIjoxNDQ2NTAyMjI2LCJpYXQiOjE0NDY0OTg2MjZ9.vIjKHAsp2TkCV505EbtCo2xQT-2oQkB-Nv5y0b6E7Mg" }); - server.create('users', { role: 'A', canEdit: true }); }, afterEach: function() { @@ -74,3 +74,23 @@ test('creating /strains/new', function(assert) { }); }); }); + +test('deleting /strains/:id', function(assert) { + const species = server.create('species'); + const strain = server.create('strains', { canEdit: true , species: species.id }); + visit(`/strains/${strain.id}`); + + andThen(function() { + assert.equal(currentURL(), `/strains/${strain.id}`); + click('button.delete'); + + andThen(function() { + click('button.delete-confirm'); + + andThen(function() { + assert.equal(currentURL(), `/strains`); + assert.equal(server.db.strains.length, 0); + }); + }); + }); +}); diff --git a/tests/acceptance/users-test.js b/tests/acceptance/users-test.js index ed08d72..2fe4d4d 100644 --- a/tests/acceptance/users-test.js +++ b/tests/acceptance/users-test.js @@ -6,10 +6,10 @@ import { invalidateSession, authenticateSession } from '../helpers/ember-simple- module('Acceptance | users', { beforeEach: function() { this.application = startApp(); + server.create('users', { role: 'A', canEdit: true, sub: 1 }); authenticateSession(this.application, { access_token: "eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJpc3MiOiJiYWN0ZGIiLCJzdWIiOiIxIiwiZXhwIjoxNDQ2NTAyMjI2LCJpYXQiOjE0NDY0OTg2MjZ9.vIjKHAsp2TkCV505EbtCo2xQT-2oQkB-Nv5y0b6E7Mg" }); - server.create('users', { role: 'A', canEdit: true }); }, afterEach: function() { diff --git a/tests/unit/initializers/global-variables-test.js b/tests/unit/initializers/global-variables-test.js deleted file mode 100644 index e2aaa52..0000000 --- a/tests/unit/initializers/global-variables-test.js +++ /dev/null @@ -1,23 +0,0 @@ -import Ember from 'ember'; -import { initialize } from '../../../initializers/global-variables'; -import { module, test } from 'qunit'; - -var container, application; - -module('Unit | Initializer | global variables', { - beforeEach: function() { - Ember.run(function() { - application = Ember.Application.create(); - container = application.__container__; - application.deferReadiness(); - }); - } -}); - -// Replace this with your real tests. -test('it works', function(assert) { - initialize(container, application); - - // you would normally confirm the results of the initializer here - assert.ok(true); -});