Merge branch 'master' into clostridium

* master: ember-cli 1.13.13
2015-11-28 11:35:23 -07:00 · 2015-11-25 21:48:26 -07:00 · 2015-11-25 21:31:24 -07:00 · 2015-11-17 16:36:48 -07:00 · 2015-11-17 16:18:05 -07:00 · 2015-11-17 16:11:22 -07:00
27 changed files with 114 additions and 13305 deletions
--- a/.gitignore
+++ b/.gitignore
@ -15,4 +15,3 @@
 /libpeerconnection.log
 npm-debug.log
 testem.log
 .firebase
--- a/README.md
+++ b/README.md
@ -1,4 +1,4 @@
-# hymenobacterdotinfo
+# clostridiumdotinfo
 This ember application is an interface for the [bactdb](https://github.com/thermokarst/bactdb).
--- a/app/index.html
+++ b/app/index.html
@ -3,7 +3,7 @@
  <head>
    <meta charset="utf-8">
    <meta http-equiv="X-UA-Compatible" content="IE=edge">
-    <title>hymenobacter.info</title>
+    <title>clostridium.info</title>
    <meta name="description" content="">
    <meta name="viewport" content="initial-scale=1.0, maximum-scale=10.0, minimum-scale=1.0, user-scalable=yes">
    <meta name="apple-mobile-web-app-capable" content="yes">
@ -12,7 +12,7 @@
    {{content-for 'head'}}
    <link rel="stylesheet" href="assets/vendor.css">
-    <link rel="stylesheet" href="assets/hymenobacterdotinfo.css">
+    <link rel="stylesheet" href="assets/clostridiumdotinfo.css">
    {{content-for 'head-footer'}}
  </head>
@ -20,7 +20,7 @@
    {{content-for 'body'}}
    <script src="assets/vendor.js"></script>
-    <script src="assets/hymenobacterdotinfo.js"></script>
+    <script src="assets/clostridiumdotinfo.js"></script>
    {{content-for 'body-footer'}}
  </body>
--- a/app/mirage/config.js
+++ b/app/mirage/config.js
@ -7,7 +7,7 @@ export default function() {
 export function testConfig() {
  this.urlPrefix = 'https://bactdb-test.herokuapp.com';
-  this.namespace = '/api/hymenobacter';
+  this.namespace = '/api/clostridium';
  this.timing = 0;
  this.get('/users');
--- a/app/mixins/delete-model.js
+++ b/app/mixins/delete-model.js
@ -8,10 +8,7 @@ export default Mixin.create({
  actions: {
    delete: function() {
      this.get('model').destroyRecord().then(() => {
-        // Instead of unloading the entire store, we keep the loaded user models
+        this.get('store').unloadAll();
        ['species', 'strain', 'characteristic', 'measurement'].map((model) => {
          this.get('store').unloadAll(model);
        });
        this.transitionToRoute(this.get('transitionRoute'));
      });
    },
--- a/app/pods/login/login-form/template.hbs
+++ b/app/pods/login/login-form/template.hbs
@ -10,7 +10,3 @@
 <div>
  {{link-to 'Forget your password?' 'users.requestlockouthelp'}}
 </div>
 <br>
 <div>
  Just checking things out? Log in with email <code>read-only</code> and password <code>bacteria</code>!
 </div>
--- a/app/pods/protected/about/template.hbs
+++ b/app/pods/protected/about/template.hbs
@ -1,3 +1,3 @@
 <div class="about">
-  <p>This is some information about hymenobacter.info</p>
+  <p>This is some information about clostridium.info</p>
 </div>
--- a/app/pods/protected/strains/edit/controller.js
+++ b/app/pods/protected/strains/edit/controller.js
@ -1,61 +1,36 @@
 import Ember from 'ember';
 import SaveModel from '../../../../mixins/save-model';
 import ajaxError from '../../../../utils/ajax-error';
-const { Controller, RSVP, inject: { service } } = Ember;
+const { Controller } = Ember;
 export default Controller.extend({
  ajaxError: service('ajax-error'),
 export default Controller.extend(SaveModel, {
  // Required for SaveModel mixin
  fallbackRouteSave: 'protected.strains.show',
  fallbackRouteCancel: 'protected.strains.show',
  actions: {
-    save: function(properties, deleteQueue, updateQueue) {
+    addCharacteristic: function() {
-      let promises = [];
+      return this.store.createRecord('measurement', {
-      properties.measurements.forEach((measurement) => {
+        characteristic: this.store.createRecord('characteristic', { sortOrder: -999 }),
        if (measurement.get('isNew')) {
          promises.push(measurement.save());
        }
      });
    },
-      updateQueue.forEach((measurement) => {
+    saveMeasurement: function(measurement, properties) {
-        promises.push(measurement.save());
+      measurement.setProperties(properties);
-      });
+      measurement.save().then(() => {
      deleteQueue.forEach((measurement) => {
        promises.push(measurement.destroyRecord());
      });
      const model = this.get('model');
      const fallbackRoute = this.get('fallbackRouteSave');
      RSVP.all(promises).then(() => {
        // Can't call _super inside promise, have to reproduce save-model
        // mixin here :-(
        model.setProperties(properties);
        model.save().then((model) => {
        this.get('flashMessages').clearMessages();
-          this.transitionToRoute(fallbackRoute, model);
+      }, () => {
-        });
+        ajaxError(measurement.get('errors'), this.get('flashMessages'));
      }, (errors) => {
        this.get('ajaxError').alert(errors);
      });
    },
-    cancel: function() {
+    deleteMeasurement: function(measurement) {
-      const model = this.get('model');
+      const characteristic = measurement.get('characteristic');
-
+      if (characteristic.get('isNew')) {
-      model.get('errors').clear();
+        characteristic.destroyRecord();
      model.rollbackAttributes();
      if (model.get('isNew')) {
        this.transitionToRoute(this.get('fallbackRouteCancel'));
      } else {
        this.transitionToRoute(this.get('fallbackRouteCancel'), model);
      }
-    },
+      measurement.destroyRecord();
    addMeasurement: function() {
      return this.store.createRecord('measurement');
    },
  },
--- a/app/pods/protected/strains/edit/template.hbs
+++ b/app/pods/protected/strains/edit/template.hbs
@ -2,8 +2,10 @@
  protected/strains/strain-form
  strain=model
  speciesList=speciesList
-  add-measurement=(action "addMeasurement")
+  add-characteristic=(action "addCharacteristic")
  allCharacteristics=allCharacteristics
  save-measurement=(action "saveMeasurement")
  delete-measurement=(action "deleteMeasurement")
  on-save=(action "save")
  on-cancel=(action "cancel")
 }}
--- a/app/pods/protected/strains/measurements-table-row/component.js
+++ b/app/pods/protected/strains/measurements-table-row/component.js
@ -10,8 +10,6 @@ export default Component.extend({
  allCharacteristics: null,
  measurement: null,
  isDirty: null,
  isNew: false,
  isQueued: false,
  // Actions
  "save-measurement": null,
@ -24,23 +22,11 @@ export default Component.extend({
  notes: null,
  resetOnInit: Ember.on('init', function() {
    this._resetProperties();
  }),
  _resetProperties: function() {
    this.get('propertiesList').forEach((field) => {
      const valueInMeasurement = this.get('measurement').get(field);
      this.set(field, valueInMeasurement);
    });
-    // Read-only attributes
+  }),
    this.set('isNew', this.get('measurement.isNew'));
    if (this.get('isNew') && !this.get('isQueued')) {
      this.set('isEditing', true);
    } else {
      this.set('isEditing', false);
    }
    this.set('isDirty', false);
  },
  updateField: function(property, value) {
    this.set(property, value);
@ -54,22 +40,12 @@ export default Component.extend({
  actions: {
    edit: function() {
-      this.set('isEditing', true);
+      this.toggleProperty('isEditing');
    },
    save: function() {
      this.attrs['save-measurement'](this.get('measurement'), this.getProperties(this.get('propertiesList')));
-      this.set('isQueued', true);
+      this.toggleProperty('isEditing');
      this._resetProperties();
    },
    cancel: function() {
      if (this.get('isNew')) {
        this.attrs['delete-measurement'](this.get('measurement'));
      } else {
        this._resetProperties();
        this.set('isEditing', false);
      }
    },
    delete: function() {
--- a/app/pods/protected/strains/measurements-table-row/loading/template.hbs
+++ b/app/pods/protected/strains/measurements-table-row/loading/template.hbs
@ -1 +0,0 @@
 {{loading-panel}}
--- a/app/pods/protected/strains/measurements-table-row/template.hbs
+++ b/app/pods/protected/strains/measurements-table-row/template.hbs
@ -1,7 +1,5 @@
 {{#if isEditing}}
-  <td>
+  <td></td>
    {{{characteristic.characteristicTypeName}}}
  </td>
  <td>
    <select onchange={{action "characteristicDidChange" value="target.value"}}>
      {{#each allCharacteristics as |characteristicChoice|}}
@ -17,13 +15,14 @@
  </td>
  {{#if canEdit}}
    <td>
      <button class="button-gray smaller" {{action 'cancel'}}>
        Cancel
      </button>
      {{#if isDirty}}
      <button class="button-green smaller" {{action 'save'}}>
        Save
      </button>
      {{else}}
      <button class="button-gray smaller" {{action 'save'}}>
        Cancel
      </button>
      {{/if}}
    </td>
  {{/if}}
--- a/app/pods/protected/strains/measurements-table/component.js
+++ b/app/pods/protected/strains/measurements-table/component.js
@ -5,13 +5,13 @@ const { sort } = computed;
 export default Component.extend({
  // Passed in
-  measurements: null,
+  strain: null,
  allCharacteristics: null,
  canEdit: false,
  canAdd: false,
  // Actions
-  "add-measurement": null,
+  "add-characteristic": null,
  "save-measurement": null,
  "delete-measurement": null,
@ -19,11 +19,15 @@ export default Component.extend({
  sortParams: ['characteristic.characteristicTypeName', 'characteristic.sortOrder', 'characteristic.characteristicName'],
  sortAsc: true,
  paramsChanged: false,
-  sortedMeasurements: sort('measurements', 'sortParams'),
+  sortedMeasurements: sort('strain.measurements', 'sortParams'),
  measurementsPresent: computed('strain.measurements', function() {
    return this.get('strain.measurements.length') > 0;
  }),
  actions: {
-    addMeasurement: function() {
+    addCharacteristic: function() {
-      return this.attrs['add-measurement']();
+      const newChar = this.attrs['add-characteristic']();
      this.get('strain.measurements').addObject(newChar);
    },
    changeSortParam: function(col) {
--- a/app/pods/protected/strains/measurements-table/template.hbs
+++ b/app/pods/protected/strains/measurements-table/template.hbs
@ -1,11 +1,12 @@
 {{#if canAdd}}
  <br>
-  <button class="button-green smaller" {{action "addMeasurement"}}>
+  <button class="button-green smaller" {{action "addCharacteristic"}}>
-    Add measurement
+    Add characteristic
  </button>
  <br><br>
 {{/if}}
 {{#if measurementsPresent}}
  {{#if paramsChanged}}
    <button class="button-gray smaller" {{action 'resetSortParam'}}>
      Reset sort
@ -47,10 +48,9 @@
        allCharacteristics=allCharacteristics
        canEdit=canEdit
      }}
    {{else}}
      <tr>
        <td colspan="5">No Measurements on Record</td>
      </tr>
    {{/each}}
  </tbody>
 </table>
 {{else}}
 No measurements on record.
 {{/if}}
--- a/app/pods/protected/strains/show/strain-card/template.hbs
+++ b/app/pods/protected/strains/show/strain-card/template.hbs
@ -71,11 +71,11 @@
    {{! ROW 5 }}
    <div class="grid-1 gutter-20">
      <dl class="span-1">
-        <dt>Characteristic Measurements</dt>
+        <dt>Characteristics</dt>
        <dd>
          {{
            protected/strains/measurements-table
-            measurements=strain.measurements
+            strain=strain
            canEdit=false
            canAdd=false
          }}
--- a/app/pods/protected/strains/strain-form/component.js
+++ b/app/pods/protected/strains/strain-form/component.js
@ -9,22 +9,22 @@ export default Component.extend(SetupMetaData, {
  isNew: null,
  isDirty: false,
  speciesList: null,
-  allCharacteristics: [],
+  allCharacteristics: null,
  updateQueue: [],
  deleteQueue: [],
  // Actions
  "on-save": null,
  "on-cancel": null,
  "on-update": null,
-  "add-measurements": null,
+  "add-characteristic": null,
  "save-measurement": null,
  "delete-measurement": null,
  // CPs
  sortParams: ['sortOrder'],
  sortedSpeciesList: sort('speciesList', 'sortParams'),
  // Property mapping
-  propertiesList: ['strainName', 'typeStrain', 'species', 'isolatedFrom', 'accessionNumbers', 'genbank', 'wholeGenomeSequence', 'notes', 'measurements'],
+  propertiesList: ['strainName', 'typeStrain', 'species', 'isolatedFrom', 'accessionNumbers', 'genbank', 'wholeGenomeSequence', 'notes'],
  strainName: null,
  typeStrain: null,
  species: null,
@ -33,55 +33,15 @@ export default Component.extend(SetupMetaData, {
  genbank: null,
  wholeGenomeSequence: null,
  notes: null,
  measurements: [],
  // Dropdown menu
  characteristics: [],
  charSortParams: ['characteristicTypeName', 'sortOrder', 'characteristicName'],
  sortedCharacteristics: sort('characteristics', 'charSortParams'),
  setupCharacteristics: Ember.on('init', function() {
    const tempArray = this._resetArray(this.get('allCharacteristics'));
    this.set('characteristics', tempArray);
  }),
  resetOnInit: Ember.on('init', function() {
    this._resetProperties();
  }),
  _resetArray: function(arr) {
    let tempArray = [];
    arr.forEach((val) => {
      if (!val.get('isNew')) {
        tempArray.push(val);
      }
    });
    return tempArray;
  },
  _resetProperties: function() {
    // Still some coupling going on here because of adding strain to measurement
    this.get('measurements').forEach((val) => {
      if (val.get('hasDirtyAttributes')) {
        val.rollbackAttributes();
      }
      if (val.get('isNew')) {
        this.get('strain.measurements').removeObject(val);
      }
    });
    this.get('propertiesList').forEach((field) => {
      const valueInStrain = this.get('strain').get(field);
      if (field === 'measurements') {
        const tempArray = this._resetArray(valueInStrain);
        this.set(field, tempArray);
      } else {
      this.set(field, valueInStrain);
      }
    });
    this.set('updateQueue', []);
    this.set('deleteQueue', []);
    // Read-only attributes
    this.set('isNew', this.get('strain.isNew'));
-  },
+  }),
  updateField: function(property, value) {
    this.set(property, value);
@ -95,32 +55,23 @@ export default Component.extend(SetupMetaData, {
  actions: {
    save: function() {
-      return this.attrs['on-save'](this.getProperties(this.get('propertiesList')), this.get('deleteQueue'), this.get('updateQueue'));
+      return this.attrs['on-save'](this.getProperties(this.get('propertiesList')));
    },
    cancel: function() {
      this._resetProperties();
      return this.attrs['on-cancel']();
    },
-    addMeasurement: function() {
+    addCharacteristic: function() {
-      const measurement = this.attrs['add-measurement']();
+      return this.attrs['add-characteristic']();
      this.get('measurements').pushObject(measurement);
    },
    saveMeasurement: function(measurement, properties) {
-      measurement.setProperties(properties);
+      return this.attrs['save-measurement'](measurement, properties);
      measurement.set('strain', this.get('strain'));
      if (!measurement.get('isNew')) {
        this.get('updateQueue').pushObject(measurement);
      }
      this.set('isDirty', true);
    },
    deleteMeasurement: function(measurement) {
-      this.get('deleteQueue').pushObject(measurement);
+      return this.attrs['delete-measurement'](measurement);
      this.get('measurements').removeObject(measurement);
      this.set('isDirty', true);
    },
    strainNameDidChange: function(value) {
@ -153,7 +104,7 @@ export default Component.extend(SetupMetaData, {
    },
    notesDidChange: function(value) {
-      this.updateField('notes', value);
+      this.updateField('strain.notes', value);
    },
  },
 });
--- a/app/pods/protected/strains/strain-form/template.hbs
+++ b/app/pods/protected/strains/strain-form/template.hbs
@ -61,9 +61,9 @@
    <div>
      {{
        protected/strains/measurements-table
-        measurements=measurements
+        strain=strain
-        add-measurement=(action "addMeasurement")
+        add-characteristic=(action "addCharacteristic")
-        allCharacteristics=sortedCharacteristics
+        allCharacteristics=allCharacteristics
        save-measurement=(action "saveMeasurement")
        delete-measurement=(action "deleteMeasurement")
        canEdit=strain.canEdit
--- a/app/pods/protected/users/changepassword/controller.js
+++ b/app/pods/protected/users/changepassword/controller.js
@ -1,11 +1,11 @@
 import Ember from 'ember';
 import ajaxErrorNew from '../../../../utils/ajax-error-new';
 const { Controller, inject: { service } } = Ember;
 export default Controller.extend({
  session: service(),
  ajax: service(),
  ajaxError: service('ajax-error'),
  currentUser: service('session-account'),
  actions: {
@ -15,13 +15,12 @@ export default Controller.extend({
      this.get('ajax').post('/users/password', { data: data }).then(() => {
        this.transitionToRoute('protected.users.show', id);
        this.get('flashMessages').information('Your password has been changed.');
-      }, (errors) => {
+      }, (error) => {
-        this.get('ajaxError').alert(errors);
+        ajaxErrorNew(error, this.get('flashMessages'));
      });
    },
    cancel: function() {
      this.get('flashMessages').clearMessages();
      this.transitionToRoute('protected.users.show', this.get('currentUser.account.id'));
    },
  },
--- a/app/serializers/application.js
+++ b/app/serializers/application.js
@ -5,41 +5,24 @@ const { RESTSerializer } = DS;
 const { isNone } = Ember;
 export default RESTSerializer.extend({
-  serializeBelongsTo: function(snapshot, json, relationship) {
+  isNewSerializerAPI: true,
    const key = relationship.key;
    if (this._canSerialize(key)) {
      const belongsToId = snapshot.belongsTo(key, { id: true });
      let payloadKey = this._getMappedKey(key, snapshot.type);
      if (payloadKey === key && this.keyForRelationship) {
        payloadKey = this.keyForRelationship(key, "belongsTo", "serialize");
      }
      if (isNone(belongsToId)) {
        json[payloadKey] = null;
      } else {
        json[payloadKey] = +belongsToId;
      }
-      if (relationship.options.polymorphic) {
+  serializeBelongsTo: function(snapshot, json, relationship) {
-        this.serializePolymorphicType(snapshot, json, relationship);
+    let key = relationship.key;
-      }
+    const belongsTo = snapshot.belongsTo(key);
-    }
+    key = this.keyForRelationship ? this.keyForRelationship(key, "belongsTo", "serialize") : key;
    json[key] = isNone(belongsTo) ? belongsTo : +belongsTo.record.id;
  },
  serializeHasMany: function(snapshot, json, relationship) {
-    const key = relationship.key;
+    let key = relationship.key;
-    if (this._shouldSerializeHasMany(snapshot, key, relationship)) {
+    const hasMany = snapshot.hasMany(key);
-      const hasMany = snapshot.hasMany(key, { ids: true });
+    key = this.keyForRelationship ? this.keyForRelationship(key, "hasMany", "serialize") : key;
-      if (hasMany !== undefined) {
+
-        let payloadKey = this._getMappedKey(key, snapshot.type);
+    json[key] = [];
        if (payloadKey === key && this.keyForRelationship) {
          payloadKey = this.keyForRelationship(key, "hasMany", "serialize");
        }
        json[payloadKey] = [];
    hasMany.forEach((item) => {
-          json[payloadKey].push(+item);
+      json[key].push(+item.id);
    });
      }
    }
  },
 });
--- a/app/services/ajax-error.js
+++ b/app/services/ajax-error.js
@ -1,19 +0,0 @@
 import Ember from 'ember';
 const { Service, inject: { service } } = Ember;
 export default Service.extend({
  flashMessages: service(),
  alert: function(error) {
    const flash = this.get('flashMessages');
    flash.clearMessages();
    window.scrollTo(0,0);
    error.errors.forEach((error) => {
      console.error(error);
      const source = error.source.pointer.split('/');
      flash.error(`${source[source.length-1].replace(/([A-Z])/g, ' $1').capitalize()} - ${error.detail}`);
    });
  }
 });
--- a/app/utils/ajax-error-new.js
+++ b/app/utils/ajax-error-new.js
@ -0,0 +1,7 @@
 export default function ajaxErrorNew(error, flash) {
  flash.clearMessages();
  error.errors.forEach((error) => {
    const source = error.source.pointer.split('/');
    flash.error(`${source[source.length-1].replace(/([A-Z])/g, ' $1').capitalize()} - ${error.detail}`);
  });
 }
--- a/bower.json
+++ b/bower.json
@ -1,5 +1,5 @@
 {
-  "name": "hymenobacterdotinfo",
+  "name": "clostridiumdotinfo",
  "dependencies": {
    "jquery": "~2.1.1",
    "ember": "~2.2.0",
--- a/config/environment.js
+++ b/config/environment.js
@ -2,7 +2,7 @@
 module.exports = function(environment) {
  var ENV = {
-    modulePrefix: 'hymenobacterdotinfo',
+    modulePrefix: 'clostridiumdotinfo',
    environment: environment,
    baseURL: '/',
    locationType: 'auto',
@ -12,9 +12,9 @@ module.exports = function(environment) {
      }
    },
    APP: {
-      genus: 'hymenobacter',
+      genus: 'clostridium',
    },
-    podModulePrefix: 'hymenobacterdotinfo/pods',
+    podModulePrefix: 'clostridiumdotinfo/pods',
    flashMessageDefaults: {
      sticky: true,
      type: 'error',
--- a/firebase.json
+++ b/firebase.json
@ -1,5 +1,5 @@
 {
-  "firebase": "hymenobacter-test",
+  "firebase": "clostridium-test",
  "public": "./dist",
  "ignore": [
    "firebase.json",
--- a/package-lock.json
+++ b/package-lock.json
--- a/package.json
+++ b/package.json
@ -1,7 +1,7 @@
 {
-  "name": "hymenobacterdotinfo",
+  "name": "clostridiumdotinfo",
  "version": "0.0.0",
-  "description": "Small description for hymenobacterdotinfo goes here",
+  "description": "Small description for clostridiumdotinfo goes here",
  "private": true,
  "directories": {
    "doc": "doc",
@ -10,11 +10,7 @@
  "scripts": {
    "build": "ember build",
    "start": "ember server",
-    "test": "ember test",
+    "test": "ember test"
    "bower": "bower",
    "ember": "ember",
    "firebase": "firebase",
    "deployProd": "firebase deploy -e prod"
  },
  "repository": "",
  "engines": {
@ -44,9 +40,5 @@
    "ember-export-application-global": "^1.0.4",
    "ember-one-way-input": "0.1.3",
    "ember-simple-auth": "1.0.1"
  },
  "dependencies": {
    "bower": "^1.8.8",
    "firebase-tools": "^7.12.1"
  }
 }
--- a/tests/index.html
+++ b/tests/index.html
@ -3,7 +3,7 @@
  <head>
    <meta charset="utf-8">
    <meta http-equiv="X-UA-Compatible" content="IE=edge">
-    <title>Hymenobacterdotinfo Tests</title>
+    <title>clostridiumdotinfo Tests</title>
    <meta name="description" content="">
    <meta name="viewport" content="width=device-width, initial-scale=1">
@ -11,7 +11,7 @@
    {{content-for 'test-head'}}
    <link rel="stylesheet" href="assets/vendor.css">
-    <link rel="stylesheet" href="assets/hymenobacterdotinfo.css">
+    <link rel="stylesheet" href="assets/clostridiumdotinfo.css">
    <link rel="stylesheet" href="assets/test-support.css">
    {{content-for 'head-footer'}}
@ -23,7 +23,7 @@
    <script src="assets/vendor.js"></script>
    <script src="assets/test-support.js"></script>
-    <script src="assets/hymenobacterdotinfo.js"></script>
+    <script src="assets/clostridiumdotinfo.js"></script>
    <script src="testem.js" integrity=""></script>
    <script src="assets/tests.js"></script>
    <script src="assets/test-loader.js"></script>
Author	SHA1	Message	Date
Matthew Dillon	4f4b5d8a4d	Merge branch 'master' into clostridium * master: ember-cli 1.13.13	2015-11-28 11:35:23 -07:00
Matthew Dillon	b3c646cb18	Merge branch 'master' into clostridium * master: ember 2.2.0 & ember-data 2.2.1	2015-11-25 21:48:26 -07:00
Matthew Dillon	26dcecaa05	Merge branch 'master' into clostridium * master: Easiest to just unload the entire store Hide measurements on new strain Fix char/strain sort order	2015-11-25 21:31:24 -07:00
Matthew Dillon	d2c1609e86	Merge branch 'master' into clostridium * master: Context-sensitive save-model mixin	2015-11-17 16:36:48 -07:00
Matthew Dillon	935a3511de	Merge branch 'master' into clostridium * master: Removing char edit text	2015-11-17 16:18:05 -07:00
Matthew Dillon	732e8482a5	Merge branch 'master' into clostridium * master: Detailed characteristics view	2015-11-17 16:11:22 -07:00
Matthew Dillon	d6d9c92ef6	Merge branch 'master' into clostridium * master: Use API sort order for species	2015-11-17 15:54:29 -07:00
Matthew Dillon	ab964bbca1	Merge branch 'master' into clostridium * master: Compare - link to chars	2015-11-17 13:47:39 -07:00
Matthew Dillon	7c503876ac	Merge branch 'master' into clostridium * master: Fix up full name, again Force sort order for compare	2015-11-17 13:19:39 -07:00
Matthew Dillon	acb17480ec	Merge branch 'master' into clostridium * master: select2 4.0	2015-11-17 12:34:20 -07:00
Matthew Dillon	019031dd58	Merge branch 'master' into clostridium * master: User adapter	2015-11-17 09:59:12 -07:00
Matthew Dillon	838588da54	Merge branch 'master' into clostridium * master: User permission error handling	2015-11-17 09:34:43 -07:00
Matthew Dillon	74e901380e	Merge branch 'master' into clostridium * master: Password reset verbiage	2015-11-17 09:20:25 -07:00
Matthew Dillon	2aa432376f	Merge branch 'master' into clostridium * master: Fix strains index strain name formatting	2015-11-17 09:08:42 -07:00
Matthew Dillon	4aaa9cdfb9	Merge branch 'master' into clostridium * master: ember 2 series Remove globals initializer	2015-11-17 08:13:07 -07:00
Matthew Dillon	0815e4c4c9	Merge branch 'master' into clostridium * master: ESA 1.0.1	2015-11-16 18:29:15 -07:00
Matthew Dillon	d93f4a3152	Merge branch 'master' into clostridium * master: Lint	2015-11-16 18:15:42 -07:00
Matthew Dillon	aa4ca05897	Merge branch 'master' into clostridium * master: Customizing refresh token flow Remove quint-notifications Tweaking bower.json to fix CI build errors Changed mind on strain model MU prop Remove ES6 features from config	2015-11-16 16:59:10 -07:00
Matthew Dillon	09650e0f1b	Merge branch 'master' into clostridium * master: Inline images in CSP Strains form formatting Clean up delete button and tests Lint	2015-11-16 10:55:10 -07:00
Matthew Dillon	6574f4986c	Merge branch 'master' into clostridium * master: select2 ember-cli-build	2015-11-13 17:01:36 -07:00
Matthew Dillon	27c2788bd2	Merge branch 'master' into clostridium * master: Dropping ember-select2 for custom component Update getProperty helper #55, species Rest of strain MU strain.strainNameMU to component Refactor delete button Handle password change errors New Ajax Error util ember-cli 1.13.12	2015-11-13 15:50:32 -07:00
Matthew Dillon	8730b6659f	fixed merge conflict in tests/index	2015-11-13 08:33:04 -07:00
Matthew Dillon	dc5b54cfbf	Merge branch 'master' into clostridium * master: Refactor characteristics/new Refactor characteristics/edit Refactor characteristics/show Refactor characteristics/index MetaData mixin Additional creation checks Set up tests for existing pod	2015-11-05 15:37:01 -07:00
Matthew Dillon	0a039e57c4	Merge branch 'master' into clostridium * master: Add staging env Tweak shippable config	2015-11-05 09:38:50 -07:00
Matthew Dillon	6bdbacf978	Tweak mirage for clostridium	2015-11-04 20:32:22 -07:00
Matthew Dillon	d674d07951	Merge branch 'master' into clostridium * master: (27 commits) Temporary fix for quill editor use in strains edit Test new species (plus minor cleanup) Wrapping up form cleanup Quill DDAU Fixed up checkbox input WIP (checkbox) ember-one-way-input DeleteModel Mixin Using mixins on new species ElevatedAccess Mixin SaveModel Mixin Refactor species edit Refactor species/show fix format date import nvm Drop node version trying a different phantomjs route Rough in species index test Tweak mirage config ember-cli-mirage ...	2015-11-04 20:29:14 -07:00
Matthew Dillon	6509f63f00	Merge branch 'master' into clostridium * master: Upgrade ember-cli-flash	2015-10-29 13:06:30 -07:00
Matthew Dillon	6810c209d8	update merge	2015-10-29 12:09:26 -07:00
Matthew Dillon	6a8a4c1a36	Merge branch 'master' into clostridium * master: Clean up password reset	2015-10-27 16:20:20 -07:00
Matthew Dillon	80bd608045	Merge branch 'master' into clostridium * master: Revert #22	2015-10-21 07:28:59 -07:00
Matthew Dillon	fd9157007a	Merge branch 'master' into clostridium * master: Missing semicolon in login controller	2015-10-20 20:35:31 -07:00
Matthew Dillon	c17abc6829	Missing pod prefix	2015-10-20 18:16:41 -07:00
Matthew Dillon	38daf6ea5b	fixing config	2015-10-20 16:46:11 -07:00
Matthew Dillon	7665452f72	Merge branch 'master' into clostridium * master: Fix "New Strain" button under species edit Don't transition to loading route during login	2015-10-19 16:52:31 -07:00
Matthew Dillon	13f8c5afcc	Merge branch 'master' into clostridium * master: Add clickable to strains chars table Sort meas table in chars Fixes #33 Manually sort strains/chars Refresh token notes Linting	2015-10-19 15:42:57 -07:00
Matthew Dillon	f6a175980a	Merge branch 'master' into clostridium * master: Clean up beforeModel(s) Remove unneeded user model hook 404/Not Found	2015-10-14 13:12:48 -07:00
Matthew Dillon	075585c54f	Merge branch 'master' into clostridium * master: Show validation errors on save	2015-10-14 10:30:00 -07:00
Matthew Dillon	c505afd0fe	Merge branch 'master' into clostridium * master: Drop soft delete	2015-10-13 16:34:23 -07:00
Matthew Dillon	421831b5a6	Merge branch 'master' into clostridium * master: Need to wait for currentUser promise Tweak custom session Keep non-admins out of user profiles	2015-10-13 10:49:52 -07:00
Matthew Dillon	096e2dca20	Merge branch 'master' into clostridium * master: Change password Clear store on role change Roughing in roles selection Confirm delete on meas/char Delete strains Delete species Delete characteristic minor cleanup ember 1.13.7 & ember-data 1.13.13 Edit user Adapter error deprecated. Add characteristic/measurement to strain Delete measurement Track changes	2015-10-12 20:48:27 -07:00
Matthew Dillon	418b294634	Merge branch 'master' into clostridium * master: Refresh token	2015-09-17 15:58:25 -07:00
Matthew Dillon	56888c7fba	Merge branch 'master' into clostridium * master: Notes Cleaning up measurement edit Dummy measurement edit Fix login error transition	2015-09-17 11:01:04 -07:00
Matthew Dillon	f4939a962e	Merge branch 'master' into clostridium * master: Drop isEditing Fix table widths	2015-09-10 16:26:28 -07:00
Matthew Dillon	53650c7808	Merge branch 'master' into clostridium * master: Working on users Roughing in user admin Add measurements to strains page Clean up models Application-wide serializer Create and edit characteristics Characteristics details Rough in detail view for characteristics Restructuring forms	2015-09-09 16:54:10 -07:00
Matthew Dillon	1ce84c7269	Merge branch 'master' into clostridium * master: Removing measurements route Edit characteristic 'Select All' in compare. Fixed sort order in strains list genbank url for whole genome sequences	2015-09-04 09:32:05 -07:00
Matthew Dillon	9696313568	Merge branch 'master' into clostridium * master: DS deprecation (rollback) Fix up moment js Drop brocfile ember-cli 1.13.8 Fix transition deprecation Upgrade ember-cli-flash	2015-08-24 19:29:10 -07:00
Matthew Dillon	4d7cc5fc56	Merge branch 'master' into clostridium * master: Enabling user zoom Conflicts: app/index.html	2015-07-20 16:19:38 -08:00
Matthew Dillon	765bc45ce7	Merge branch 'master' into clostridium * master: Fix broken strain reference Rich text species and strains Add in quill WYSIWYG	2015-07-20 12:23:17 -08:00
Matthew Dillon	b5a260615b	Merge branch 'master' into clostridium * master: Add CSV download for compare (change backing service, too) Drop new user component, for now Clean up some loading stuff	2015-07-17 16:39:57 -08:00
Matthew Dillon	8c3bf30ace	Merge branch 'master' into clostridium * master: Clean up forms a bit Missing import in ajax-request	2015-07-16 21:24:46 -08:00
Matthew Dillon	c996dd5374	Merge branch 'master' into clostridium * master: Handle user lockouts (new authenticator added) catch split exception in parsebase64 Refactor ajax request	2015-07-16 21:13:54 -08:00
Matthew Dillon	cbac28e040	Merge branch 'master' into clostridium * master: Working on deprecations	2015-07-15 15:51:54 -08:00
Matthew Dillon	cca97e7542	Merge branch 'master' into clostridium * master: Clean up verification Update flash message Inject global var service in routes	2015-07-14 13:43:57 -08:00
Matthew Dillon	14a678092e	Missed in merge	2015-07-14 08:05:01 -08:00
Matthew Dillon	0ab0cf5a6a	Merge branch 'master' into clostridium * master: Remove duplicate mixins auto-reload compare/results model, cleanup	2015-07-14 08:03:21 -08:00
Matthew Dillon	f295082592	update merge from master	2015-07-13 16:32:03 -08:00
Matthew Dillon	8ab97c00e1	Updated merge from master	2015-07-07 14:41:40 -08:00
Matthew Dillon	9e8b02ac90	Overflow table	2015-07-07 14:38:36 -08:00
Matthew Dillon	3436989a89	Edit species	2015-07-07 14:28:16 -08:00
Matthew Dillon	583d7ca0db	SQUASH	2015-07-07 14:28:06 -08:00
Matthew Dillon	38894d94e7	Sideload strains in species list	2015-07-07 11:09:41 -08:00
Matthew Dillon	ae7f3bdafa	Test-drive metadata	2015-07-07 09:56:49 -08:00
Matthew Dillon	4bbf931853	Going back to model reference	2015-07-07 08:38:05 -08:00
Matthew Dillon	9aed858982	Continuing with species refactor	2015-07-07 07:30:48 -08:00
Matthew Dillon	622cd0faaf	Species edit refactor (wip)	2015-07-06 11:02:41 -08:00
Matthew Dillon	236a622505	Merge branch 'master' into clostridium * master: Stopgap sort order + cleanup	2015-06-17 16:24:23 -08:00
Matthew Dillon	6d04a8a6c8	init clostridium	2015-06-17 14:47:40 -08:00
`@ -1,4 +1,4 @@`
	`# hymenobacterdotinfo`	`# clostridiumdotinfo`

	`This ember application is an interface for the [bactdb](https://github.com/thermokarst/bactdb).`	`This ember application is an interface for the [bactdb](https://github.com/thermokarst/bactdb).`