Errors package
This commit is contained in:
parent
0eec85ed08
commit
a880fdea82
24 changed files with 215 additions and 169 deletions
|
@ -5,6 +5,7 @@ import (
|
|||
"net/http"
|
||||
"net/url"
|
||||
|
||||
"github.com/thermokarst/bactdb/errors"
|
||||
"github.com/thermokarst/bactdb/helpers"
|
||||
"github.com/thermokarst/bactdb/models"
|
||||
"github.com/thermokarst/bactdb/payloads"
|
||||
|
@ -21,46 +22,46 @@ func (c CharacteristicService) Unmarshal(b []byte) (types.Entity, error) {
|
|||
|
||||
func (c CharacteristicService) List(val *url.Values, claims *types.Claims) (types.Entity, *types.AppError) {
|
||||
if val == nil {
|
||||
return nil, helpers.ErrMustProvideOptionsJSON
|
||||
return nil, NewJSONError(errors.MustProvideOptions, http.StatusInternalServerError)
|
||||
}
|
||||
var opt helpers.ListOptions
|
||||
if err := helpers.SchemaDecoder.Decode(&opt, *val); err != nil {
|
||||
return nil, types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return nil, NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
characteristics, err := models.ListCharacteristics(opt, claims)
|
||||
if err != nil {
|
||||
return nil, types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return nil, NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
strains_opt, err := models.StrainOptsFromCharacteristics(opt)
|
||||
if err != nil {
|
||||
return nil, types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return nil, NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
strains, err := models.ListStrains(*strains_opt, claims)
|
||||
if err != nil {
|
||||
return nil, types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return nil, NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
species_opt, err := models.SpeciesOptsFromStrains(*strains_opt)
|
||||
if err != nil {
|
||||
return nil, types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return nil, NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
species, err := models.ListSpecies(*species_opt, claims)
|
||||
if err != nil {
|
||||
return nil, types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return nil, NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
measurements_opt, err := models.MeasurementOptsFromCharacteristics(opt)
|
||||
if err != nil {
|
||||
return nil, types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return nil, NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
measurements, err := models.ListMeasurements(*measurements_opt, claims)
|
||||
if err != nil {
|
||||
return nil, types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return nil, NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
payload := payloads.Characteristics{
|
||||
|
@ -79,27 +80,27 @@ func (c CharacteristicService) List(val *url.Values, claims *types.Claims) (type
|
|||
func (c CharacteristicService) Get(id int64, genus string, claims *types.Claims) (types.Entity, *types.AppError) {
|
||||
characteristic, err := models.GetCharacteristic(id, genus, claims)
|
||||
if err != nil {
|
||||
return nil, types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return nil, NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
strains, strain_opts, err := models.StrainsFromCharacteristicId(id, genus, claims)
|
||||
if err != nil {
|
||||
return nil, types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return nil, NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
species_opt, err := models.SpeciesOptsFromStrains(*strain_opts)
|
||||
if err != nil {
|
||||
return nil, types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return nil, NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
species, err := models.ListSpecies(*species_opt, claims)
|
||||
if err != nil {
|
||||
return nil, types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return nil, NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
measurements, _, err := models.MeasurementsFromCharacteristicId(id, genus, claims)
|
||||
if err != nil {
|
||||
return nil, types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return nil, NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
payload := payloads.Characteristic{
|
||||
|
@ -120,7 +121,7 @@ func (c CharacteristicService) Update(id int64, e *types.Entity, genus string, c
|
|||
// First, handle Characteristic Type
|
||||
id, err := models.InsertOrGetCharacteristicType(payload.Characteristic.CharacteristicType, claims)
|
||||
if err != nil {
|
||||
return types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
payload.Characteristic.CanEdit = helpers.CanEdit(claims, payload.Characteristic.CreatedBy)
|
||||
|
@ -129,26 +130,26 @@ func (c CharacteristicService) Update(id int64, e *types.Entity, genus string, c
|
|||
// TODO: fix this
|
||||
count, err := models.DBH.Update(payload.Characteristic.CharacteristicBase)
|
||||
if err != nil {
|
||||
return types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
if count != 1 {
|
||||
// TODO: fix this
|
||||
return types.NewJSONError(models.ErrCharacteristicNotUpdated, http.StatusBadRequest)
|
||||
return NewJSONError(errors.CharacteristicNotUpdated, http.StatusBadRequest)
|
||||
}
|
||||
|
||||
strains, strain_opts, err := models.StrainsFromCharacteristicId(id, genus, claims)
|
||||
if err != nil {
|
||||
return types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
species_opt, err := models.SpeciesOptsFromStrains(*strain_opts)
|
||||
if err != nil {
|
||||
return types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
species, err := models.ListSpecies(*species_opt, claims)
|
||||
if err != nil {
|
||||
return types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
payload.Strains = strains
|
||||
|
@ -166,19 +167,19 @@ func (c CharacteristicService) Create(e *types.Entity, genus string, claims *typ
|
|||
|
||||
id, err := models.InsertOrGetCharacteristicType(payload.Characteristic.CharacteristicType, claims)
|
||||
if err != nil {
|
||||
return types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
payload.Characteristic.CharacteristicTypeId = id
|
||||
|
||||
// TODO: fix this
|
||||
err = models.DBH.Insert(payload.Characteristic.CharacteristicBase)
|
||||
if err != nil {
|
||||
return types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
characteristic, err := models.GetCharacteristic(payload.Characteristic.Id, genus, claims)
|
||||
if err != nil {
|
||||
return types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
payload.Characteristic = characteristic
|
||||
|
|
10
api/helpers.go
Normal file
10
api/helpers.go
Normal file
|
@ -0,0 +1,10 @@
|
|||
package api
|
||||
|
||||
import "github.com/thermokarst/bactdb/types"
|
||||
|
||||
func NewJSONError(err error, status int) *types.AppError {
|
||||
return &types.AppError{
|
||||
Error: types.ErrorJSON{Err: err},
|
||||
Status: status,
|
||||
}
|
||||
}
|
|
@ -5,6 +5,7 @@ import (
|
|||
"net/http"
|
||||
"net/url"
|
||||
|
||||
"github.com/thermokarst/bactdb/errors"
|
||||
"github.com/thermokarst/bactdb/helpers"
|
||||
"github.com/thermokarst/bactdb/models"
|
||||
"github.com/thermokarst/bactdb/payloads"
|
||||
|
@ -21,36 +22,36 @@ func (s MeasurementService) Unmarshal(b []byte) (types.Entity, error) {
|
|||
|
||||
func (m MeasurementService) List(val *url.Values, claims *types.Claims) (types.Entity, *types.AppError) {
|
||||
if val == nil {
|
||||
return nil, helpers.ErrMustProvideOptionsJSON
|
||||
return nil, NewJSONError(errors.MustProvideOptions, http.StatusInternalServerError)
|
||||
}
|
||||
var opt helpers.MeasurementListOptions
|
||||
if err := helpers.SchemaDecoder.Decode(&opt, *val); err != nil {
|
||||
return nil, types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return nil, NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
measurements, err := models.ListMeasurements(opt, claims)
|
||||
if err != nil {
|
||||
return nil, types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return nil, NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
char_opts, err := models.CharacteristicOptsFromMeasurements(opt)
|
||||
if err != nil {
|
||||
return nil, types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return nil, NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
characteristics, err := models.ListCharacteristics(*char_opts, claims)
|
||||
if err != nil {
|
||||
return nil, types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return nil, NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
strain_opts, err := models.StrainOptsFromMeasurements(opt)
|
||||
if err != nil {
|
||||
return nil, types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return nil, NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
strains, err := models.ListStrains(*strain_opts, claims)
|
||||
if err != nil {
|
||||
return nil, types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return nil, NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
payload := payloads.Measurements{
|
||||
|
@ -65,7 +66,7 @@ func (m MeasurementService) List(val *url.Values, claims *types.Claims) (types.E
|
|||
func (m MeasurementService) Get(id int64, genus string, claims *types.Claims) (types.Entity, *types.AppError) {
|
||||
measurement, err := models.GetMeasurement(id, genus, claims)
|
||||
if err != nil {
|
||||
return nil, types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return nil, NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
payload := payloads.Measurement{
|
||||
|
@ -83,7 +84,7 @@ func (s MeasurementService) Update(id int64, e *types.Entity, genus string, clai
|
|||
if payload.Measurement.TextMeasurementType.Valid {
|
||||
id, err := models.GetTextMeasurementTypeId(payload.Measurement.TextMeasurementType.String)
|
||||
if err != nil {
|
||||
return types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
payload.Measurement.TextMeasurementTypeId.Int64 = id
|
||||
payload.Measurement.TextMeasurementTypeId.Valid = true
|
||||
|
@ -92,16 +93,16 @@ func (s MeasurementService) Update(id int64, e *types.Entity, genus string, clai
|
|||
// TODO: fix this
|
||||
count, err := models.DBH.Update(payload.Measurement.MeasurementBase)
|
||||
if err != nil {
|
||||
return types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
if count != 1 {
|
||||
// TODO: fix this
|
||||
return types.NewJSONError(models.ErrStrainNotUpdated, http.StatusBadRequest)
|
||||
return NewJSONError(errors.StrainNotUpdated, http.StatusBadRequest)
|
||||
}
|
||||
|
||||
measurement, err := models.GetMeasurement(id, genus, claims)
|
||||
if err != nil {
|
||||
return types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
payload.Measurement = measurement
|
||||
|
@ -114,7 +115,7 @@ func (m MeasurementService) Delete(id int64, genus string, claims *types.Claims)
|
|||
// TODO: fix this
|
||||
_, err := models.DBH.Exec(q, id)
|
||||
if err != nil {
|
||||
return types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
return nil
|
||||
}
|
||||
|
@ -126,7 +127,7 @@ func (m MeasurementService) Create(e *types.Entity, genus string, claims *types.
|
|||
|
||||
// TODO: fix this
|
||||
if err := models.DBH.Insert(payload.Measurement.MeasurementBase); err != nil {
|
||||
return types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
return nil
|
||||
|
|
|
@ -5,6 +5,7 @@ import (
|
|||
"net/http"
|
||||
"net/url"
|
||||
|
||||
"github.com/thermokarst/bactdb/errors"
|
||||
"github.com/thermokarst/bactdb/helpers"
|
||||
"github.com/thermokarst/bactdb/models"
|
||||
"github.com/thermokarst/bactdb/payloads"
|
||||
|
@ -21,26 +22,26 @@ func (s SpeciesService) Unmarshal(b []byte) (types.Entity, error) {
|
|||
|
||||
func (s SpeciesService) List(val *url.Values, claims *types.Claims) (types.Entity, *types.AppError) {
|
||||
if val == nil {
|
||||
return nil, helpers.ErrMustProvideOptionsJSON
|
||||
return nil, NewJSONError(errors.MustProvideOptions, http.StatusInternalServerError)
|
||||
}
|
||||
var opt helpers.ListOptions
|
||||
if err := helpers.SchemaDecoder.Decode(&opt, *val); err != nil {
|
||||
return nil, types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return nil, NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
species, err := models.ListSpecies(opt, claims)
|
||||
if err != nil {
|
||||
return nil, types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return nil, NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
strains_opt, err := models.StrainOptsFromSpecies(opt)
|
||||
if err != nil {
|
||||
return nil, types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return nil, NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
strains, err := models.ListStrains(*strains_opt, claims)
|
||||
if err != nil {
|
||||
return nil, types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return nil, NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
payload := payloads.ManySpecies{
|
||||
|
@ -57,12 +58,12 @@ func (s SpeciesService) List(val *url.Values, claims *types.Claims) (types.Entit
|
|||
func (s SpeciesService) Get(id int64, genus string, claims *types.Claims) (types.Entity, *types.AppError) {
|
||||
species, err := models.GetSpecies(id, genus, claims)
|
||||
if err != nil {
|
||||
return nil, types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return nil, NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
strains, err := models.StrainsFromSpeciesId(id, genus, claims)
|
||||
if err != nil {
|
||||
return nil, types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return nil, NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
payload := payloads.Species{
|
||||
|
@ -83,29 +84,29 @@ func (s SpeciesService) Update(id int64, e *types.Entity, genus string, claims *
|
|||
|
||||
genus_id, err := models.GenusIdFromName(genus)
|
||||
if err != nil {
|
||||
return types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
payload.Species.SpeciesBase.GenusID = genus_id
|
||||
|
||||
// TODO: fix this
|
||||
count, err := models.DBH.Update(payload.Species.SpeciesBase)
|
||||
if err != nil {
|
||||
return types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
if count != 1 {
|
||||
// TODO: fix this
|
||||
return types.NewJSONError(models.ErrSpeciesNotUpdated, http.StatusBadRequest)
|
||||
return NewJSONError(errors.SpeciesNotUpdated, http.StatusBadRequest)
|
||||
}
|
||||
|
||||
// Reload to send back down the wire
|
||||
species, err := models.GetSpecies(id, genus, claims)
|
||||
if err != nil {
|
||||
return types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
strains, err := models.StrainsFromSpeciesId(id, genus, claims)
|
||||
if err != nil {
|
||||
return types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
payload.Species = species
|
||||
|
@ -124,20 +125,20 @@ func (s SpeciesService) Create(e *types.Entity, genus string, claims *types.Clai
|
|||
|
||||
genus_id, err := models.GenusIdFromName(genus)
|
||||
if err != nil {
|
||||
return types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
payload.Species.SpeciesBase.GenusID = genus_id
|
||||
|
||||
// TODO: fix this
|
||||
err = models.DBH.Insert(payload.Species.SpeciesBase)
|
||||
if err != nil {
|
||||
return types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
// Reload to send back down the wire
|
||||
species, err := models.GetSpecies(payload.Species.Id, genus, claims)
|
||||
if err != nil {
|
||||
return types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
// Note, no strains when new species
|
||||
|
|
|
@ -5,6 +5,7 @@ import (
|
|||
"net/http"
|
||||
"net/url"
|
||||
|
||||
"github.com/thermokarst/bactdb/errors"
|
||||
"github.com/thermokarst/bactdb/helpers"
|
||||
"github.com/thermokarst/bactdb/models"
|
||||
"github.com/thermokarst/bactdb/payloads"
|
||||
|
@ -21,36 +22,36 @@ func (s StrainService) Unmarshal(b []byte) (types.Entity, error) {
|
|||
|
||||
func (s StrainService) List(val *url.Values, claims *types.Claims) (types.Entity, *types.AppError) {
|
||||
if val == nil {
|
||||
return nil, helpers.ErrMustProvideOptionsJSON
|
||||
return nil, NewJSONError(errors.MustProvideOptions, http.StatusInternalServerError)
|
||||
}
|
||||
var opt helpers.ListOptions
|
||||
if err := helpers.SchemaDecoder.Decode(&opt, *val); err != nil {
|
||||
return nil, types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return nil, NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
strains, err := models.ListStrains(opt, claims)
|
||||
if err != nil {
|
||||
return nil, types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return nil, NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
species_opt, err := models.SpeciesOptsFromStrains(opt)
|
||||
if err != nil {
|
||||
return nil, types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return nil, NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
species, err := models.ListSpecies(*species_opt, claims)
|
||||
if err != nil {
|
||||
return nil, types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return nil, NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
characteristics_opt, err := models.CharacteristicsOptsFromStrains(opt)
|
||||
if err != nil {
|
||||
return nil, types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return nil, NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
characteristics, err := models.ListCharacteristics(*characteristics_opt, claims)
|
||||
if err != nil {
|
||||
return nil, types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return nil, NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
characteristic_ids := []int64{}
|
||||
|
@ -73,7 +74,7 @@ func (s StrainService) List(val *url.Values, claims *types.Claims) (types.Entity
|
|||
|
||||
measurements, err := models.ListMeasurements(measurement_opt, claims)
|
||||
if err != nil {
|
||||
return nil, types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return nil, NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
payload := payloads.Strains{
|
||||
|
@ -92,23 +93,23 @@ func (s StrainService) List(val *url.Values, claims *types.Claims) (types.Entity
|
|||
func (s StrainService) Get(id int64, genus string, claims *types.Claims) (types.Entity, *types.AppError) {
|
||||
strain, err := models.GetStrain(id, genus, claims)
|
||||
if err != nil {
|
||||
return nil, types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return nil, NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
species, err := models.GetSpecies(strain.SpeciesId, genus, claims)
|
||||
if err != nil {
|
||||
return nil, types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return nil, NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
opt := helpers.ListOptions{Genus: genus, Ids: []int64{id}}
|
||||
characteristics_opt, err := models.CharacteristicsOptsFromStrains(opt)
|
||||
if err != nil {
|
||||
return nil, types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return nil, NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
characteristics, err := models.ListCharacteristics(*characteristics_opt, claims)
|
||||
if err != nil {
|
||||
return nil, types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return nil, NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
characteristic_ids := []int64{}
|
||||
|
@ -126,7 +127,7 @@ func (s StrainService) Get(id int64, genus string, claims *types.Claims) (types.
|
|||
|
||||
measurements, err := models.ListMeasurements(measurement_opt, claims)
|
||||
if err != nil {
|
||||
return nil, types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return nil, NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
var many_species models.ManySpecies = []*models.Species{species}
|
||||
|
@ -152,21 +153,21 @@ func (s StrainService) Update(id int64, e *types.Entity, genus string, claims *t
|
|||
// TODO: fix this
|
||||
count, err := models.DBH.Update(payload.Strain.StrainBase)
|
||||
if err != nil {
|
||||
return types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
if count != 1 {
|
||||
// TODO: fix this
|
||||
return types.NewJSONError(models.ErrStrainNotUpdated, http.StatusBadRequest)
|
||||
return NewJSONError(errors.StrainNotUpdated, http.StatusBadRequest)
|
||||
}
|
||||
|
||||
strain, err := models.GetStrain(id, genus, claims)
|
||||
if err != nil {
|
||||
return types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
species, err := models.GetSpecies(strain.SpeciesId, genus, claims)
|
||||
if err != nil {
|
||||
return types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
var many_species models.ManySpecies = []*models.Species{species}
|
||||
|
@ -187,17 +188,17 @@ func (s StrainService) Create(e *types.Entity, genus string, claims *types.Claim
|
|||
|
||||
// TODO: fix this
|
||||
if err := models.DBH.Insert(payload.Strain.StrainBase); err != nil {
|
||||
return types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
strain, err := models.GetStrain(payload.Strain.Id, genus, claims)
|
||||
if err != nil {
|
||||
return types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
species, err := models.GetSpecies(strain.SpeciesId, genus, claims)
|
||||
if err != nil {
|
||||
return types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
var many_species models.ManySpecies = []*models.Species{species}
|
||||
|
|
54
api/users.go
54
api/users.go
|
@ -2,7 +2,6 @@ package api
|
|||
|
||||
import (
|
||||
"encoding/json"
|
||||
"errors"
|
||||
"fmt"
|
||||
"log"
|
||||
"net/http"
|
||||
|
@ -13,6 +12,7 @@ import (
|
|||
"github.com/thermokarst/bactdb/Godeps/_workspace/src/github.com/mailgun/mailgun-go"
|
||||
"github.com/thermokarst/bactdb/Godeps/_workspace/src/golang.org/x/crypto/bcrypt"
|
||||
"github.com/thermokarst/bactdb/auth"
|
||||
"github.com/thermokarst/bactdb/errors"
|
||||
"github.com/thermokarst/bactdb/helpers"
|
||||
"github.com/thermokarst/bactdb/models"
|
||||
"github.com/thermokarst/bactdb/payloads"
|
||||
|
@ -20,11 +20,7 @@ import (
|
|||
)
|
||||
|
||||
var (
|
||||
// TODO: fix this
|
||||
ErrUserNotFoundJSON = types.NewJSONError(models.ErrUserNotFound, http.StatusNotFound)
|
||||
ErrUserNotUpdatedJSON = types.NewJSONError(models.ErrUserNotUpdated, http.StatusBadRequest)
|
||||
ErrEmailAddressTakenJSON = types.NewJSONError(models.ErrEmailAddressTaken, http.StatusBadRequest)
|
||||
MgAccts = make(map[string]mailgun.Mailgun)
|
||||
MgAccts = make(map[string]mailgun.Mailgun)
|
||||
)
|
||||
|
||||
type UserService struct{}
|
||||
|
@ -37,11 +33,11 @@ func (u UserService) Unmarshal(b []byte) (types.Entity, error) {
|
|||
|
||||
func (u UserService) List(val *url.Values, claims *types.Claims) (types.Entity, *types.AppError) {
|
||||
if val == nil {
|
||||
return nil, helpers.ErrMustProvideOptionsJSON
|
||||
return nil, NewJSONError(errors.MustProvideOptions, http.StatusInternalServerError)
|
||||
}
|
||||
var opt helpers.ListOptions
|
||||
if err := helpers.SchemaDecoder.Decode(&opt, *val); err != nil {
|
||||
return nil, types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return nil, NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
// TODO: fix this
|
||||
|
@ -52,7 +48,7 @@ func (u UserService) List(val *url.Values, claims *types.Claims) (types.Entity,
|
|||
WHERE verified IS TRUE
|
||||
AND deleted_at IS NULL;`
|
||||
if err := models.DBH.Select(&users, sql); err != nil {
|
||||
return nil, types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return nil, NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
return &users, nil
|
||||
}
|
||||
|
@ -61,7 +57,7 @@ func (u UserService) Get(id int64, dummy string, claims *types.Claims) (types.En
|
|||
user, err := models.DbGetUserById(id)
|
||||
user.Password = ""
|
||||
if err != nil {
|
||||
return nil, types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return nil, NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
user.CanEdit = claims.Role == "A" || id == claims.Sub
|
||||
|
@ -80,7 +76,7 @@ func (u UserService) Update(id int64, e *types.Entity, dummy string, claims *typ
|
|||
|
||||
original_user, err := models.DbGetUserById(id)
|
||||
if err != nil {
|
||||
return types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
user.Id = id
|
||||
|
@ -96,10 +92,10 @@ func (u UserService) Update(id int64, e *types.Entity, dummy string, claims *typ
|
|||
count, err := models.DBH.Update(user)
|
||||
user.Password = ""
|
||||
if err != nil {
|
||||
return types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
if count != 1 {
|
||||
return ErrUserNotUpdatedJSON
|
||||
return NewJSONError(errors.UserNotUpdated, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
return nil
|
||||
|
@ -115,7 +111,7 @@ func (u UserService) Create(e *types.Entity, dummy string, claims *types.Claims)
|
|||
user.UpdatedAt = ct
|
||||
hash, err := bcrypt.GenerateFromPassword([]byte(user.Password), 12)
|
||||
if err != nil {
|
||||
return types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
user.Password = string(hash)
|
||||
user.Role = "R"
|
||||
|
@ -125,10 +121,10 @@ func (u UserService) Create(e *types.Entity, dummy string, claims *types.Claims)
|
|||
if err := models.DBH.Insert(user); err != nil {
|
||||
if err, ok := err.(*pq.Error); ok {
|
||||
if err.Code == "23505" {
|
||||
return ErrEmailAddressTakenJSON
|
||||
return NewJSONError(errors.EmailAddressTaken, http.StatusInternalServerError)
|
||||
}
|
||||
}
|
||||
return types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
user.Password = "password" // don't want to send the hashed PW back to the client
|
||||
|
@ -137,12 +133,12 @@ func (u UserService) Create(e *types.Entity, dummy string, claims *types.Claims)
|
|||
// TODO: move helpers.GenerateNonce
|
||||
nonce, err := helpers.GenerateNonce()
|
||||
if err != nil {
|
||||
return types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
// TODO: fix this
|
||||
_, err = models.DBH.Exec(q, user.Id, nonce, claims.Ref, ct)
|
||||
if err != nil {
|
||||
return types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
// Send out confirmation email
|
||||
|
@ -161,7 +157,7 @@ func (u UserService) Create(e *types.Entity, dummy string, claims *types.Claims)
|
|||
_, _, err := mg.Send(m)
|
||||
if err != nil {
|
||||
log.Printf("%+v\n", err)
|
||||
return types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
}
|
||||
|
||||
|
@ -179,16 +175,16 @@ func HandleUserVerify(w http.ResponseWriter, r *http.Request) *types.AppError {
|
|||
}
|
||||
if err := models.DBH.SelectOne(&ver, q, nonce); err != nil {
|
||||
log.Print(err)
|
||||
return types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
if ver.User_id == 0 {
|
||||
return types.NewJSONError(errors.New("No user found"), http.StatusInternalServerError)
|
||||
return NewJSONError(errors.UserNotFound, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
var user models.User
|
||||
if err := models.DBH.Get(&user, ver.User_id); err != nil {
|
||||
return types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
user.UpdatedAt = helpers.CurrentTime()
|
||||
|
@ -196,16 +192,16 @@ func HandleUserVerify(w http.ResponseWriter, r *http.Request) *types.AppError {
|
|||
|
||||
count, err := models.DBH.Update(&user)
|
||||
if err != nil {
|
||||
return types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
if count != 1 {
|
||||
return types.NewJSONError(errors.New("Count 0"), http.StatusInternalServerError)
|
||||
return NewJSONError(errors.UserNotUpdated, http.StatusInternalServerError)
|
||||
}
|
||||
|
||||
q = `DELETE FROM verification WHERE user_id=$1;`
|
||||
_, err = models.DBH.Exec(q, user.Id)
|
||||
if err != nil {
|
||||
return types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
fmt.Fprintln(w, `{"msg":"All set! Please log in."}`)
|
||||
return nil
|
||||
|
@ -214,16 +210,16 @@ func HandleUserVerify(w http.ResponseWriter, r *http.Request) *types.AppError {
|
|||
func HandleUserLockout(w http.ResponseWriter, r *http.Request) *types.AppError {
|
||||
email := r.FormValue("email")
|
||||
if email == "" {
|
||||
return types.NewJSONError(errors.New("missing email"), http.StatusInternalServerError)
|
||||
return NewJSONError(errors.UserMissingEmail, http.StatusInternalServerError)
|
||||
}
|
||||
token, err := auth.Middleware.CreateToken(email)
|
||||
if err != nil {
|
||||
return types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
origin := r.Header.Get("Origin")
|
||||
hostUrl, err := url.Parse(origin)
|
||||
if err != nil {
|
||||
return types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
hostUrl.Path += "/users/lockoutauthenticate"
|
||||
params := url.Values{}
|
||||
|
@ -246,7 +242,7 @@ func HandleUserLockout(w http.ResponseWriter, r *http.Request) *types.AppError {
|
|||
_, _, err := mg.Send(m)
|
||||
if err != nil {
|
||||
log.Printf("%+v\n", err)
|
||||
return types.NewJSONError(err, http.StatusInternalServerError)
|
||||
return NewJSONError(err, http.StatusInternalServerError)
|
||||
}
|
||||
}
|
||||
|
||||
|
|
Reference in a new issue