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strain whole genome sequence

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This commit is contained in:
Matthew Dillon 2015-06-18 12:46:08 -08:00
parent 0a73b347f9
commit 43800d6dd8
3 changed files with 34 additions and 18 deletions
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33
app/models/strain.js
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@ -2,22 +2,23 @@ import DS from 'ember-data';
import Ember from 'ember'; import Ember from 'ember';
export default DS.Model.extend({ export default DS.Model.extend({
measurements : DS.hasMany('measurements', { async: true }), measurements : DS.hasMany('measurements', { async: true }),
species : DS.belongsTo('species', { async: true }), species : DS.belongsTo('species', { async: true }),
strainName : DS.attr('string'), strainName : DS.attr('string'),
typeStrain : DS.attr('boolean'), typeStrain : DS.attr('boolean'),
accessionNumbers : DS.attr('string'), accessionNumbers : DS.attr('string'),
genbank : DS.attr('string'), genbank : DS.attr('string'),
isolatedFrom : DS.attr('string'), wholeGenomeSequence: DS.attr('string'),
notes : DS.attr('string'), isolatedFrom : DS.attr('string'),
createdAt : DS.attr('date'), notes : DS.attr('string'),
updatedAt : DS.attr('date'), createdAt : DS.attr('date'),
deletedAt : DS.attr('date'), updatedAt : DS.attr('date'),
createdBy : DS.attr('number'), deletedAt : DS.attr('date'),
updatedBy : DS.attr('number'), createdBy : DS.attr('number'),
deletedBy : DS.attr('number'), updatedBy : DS.attr('number'),
totalMeasurements: DS.attr('number'), deletedBy : DS.attr('number'),
sortOrder : DS.attr('number'), totalMeasurements : DS.attr('number'),
sortOrder : DS.attr('number'),
strainNameMU: function() { strainNameMU: function() {
let type = this.get('typeStrain') ? '<sup>T</sup>' : ''; let type = this.get('typeStrain') ? '<sup>T</sup>' : '';

15
app/pods/components/strain-details/template.hbs
View file

@ -5,7 +5,7 @@
{{#if isEditing}} {{#if isEditing}}
{{input value=strain.strainName}} {{input value=strain.strainName}}
{{else}} {{else}}
<em>{{strain.strainName}}</em> {{strain.strainNameMU}}
{{/if}} {{/if}}
{{display-errors a=strain.errors.strainName}} {{display-errors a=strain.errors.strainName}}
</legend> </legend>
@ -43,7 +43,7 @@
</div> </div>
{{! ROW 2 }} {{! ROW 2 }}
<div class="grid-4"> <div class="grid-6">
<dl class="span-2"> <dl class="span-2">
<dt>Accession Numbers</dt> <dt>Accession Numbers</dt>
<dd> <dd>
@ -66,6 +66,17 @@
{{display-errors a=strain.errors.genbank}} {{display-errors a=strain.errors.genbank}}
</dd> </dd>
</dl> </dl>
<dl class="span-2">
<dt>Whole Genome Sequence</dt>
<dd>
{{#if isEditing}}
{{input value=strain.wholeGenomeSequence}}
{{else}}
{{strain.wholeGenomeSequence}}
{{/if}}
{{display-errors a=strain.errors.wholeGenomeSequence}}
</dd>
</dl>
</div> </div>
{{! ROW 3 }} {{! ROW 3 }}

4
server/mocks/strains.js
View file

@ -10,6 +10,7 @@ module.exports = function(app) {
typeStrain: true, typeStrain: true,
accessionNumbers: "Test Accession", accessionNumbers: "Test Accession",
genbank: "Test Genbank", genbank: "Test Genbank",
wholeGenomeSequence: "Seq123",
isolatedFrom: "Location 1", isolatedFrom: "Location 1",
measurements: [1,2,3,4,5], measurements: [1,2,3,4,5],
createdAt: "0001-01-01T00:00:00Z", createdAt: "0001-01-01T00:00:00Z",
@ -29,6 +30,7 @@ module.exports = function(app) {
typeStrain: false, typeStrain: false,
accessionNumbers: "Test Accession", accessionNumbers: "Test Accession",
genbank: "Test Genbank", genbank: "Test Genbank",
wholeGenomeSequence: null,
isolatedFrom: "Location 2", isolatedFrom: "Location 2",
measurements: [6,7,8,9,10], measurements: [6,7,8,9,10],
createdAt: "0001-01-01T00:00:00Z", createdAt: "0001-01-01T00:00:00Z",
@ -48,6 +50,7 @@ module.exports = function(app) {
typeStrain: true, typeStrain: true,
accessionNumbers: "Test Accession", accessionNumbers: "Test Accession",
genbank: "Test Genbank", genbank: "Test Genbank",
wholeGenomeSequence: "Seq123",
isolatedFrom: "Location 1", isolatedFrom: "Location 1",
measurements: [], measurements: [],
createdAt: "0001-01-01T00:00:00Z", createdAt: "0001-01-01T00:00:00Z",
@ -67,6 +70,7 @@ module.exports = function(app) {
typeStrain: true, typeStrain: true,
accessionNumbers: "Test Accession", accessionNumbers: "Test Accession",
genbank: "Test Genbank", genbank: "Test Genbank",
wholeGenomeSequence: "Seq123",
isolatedFrom: "Location 2", isolatedFrom: "Location 2",
measurements: [], measurements: [],
createdAt: "0001-01-01T00:00:00Z", createdAt: "0001-01-01T00:00:00Z",